KEGG   Bordetella holmesii ATCC 51541: D560_2129
Entry
D560_2129         CDS       T03052                                 
Name
(GenBank) NUDIX domain protein
  KO
K08311  putative (di)nucleoside polyphosphate hydrolase [EC:3.6.1.-]
Organism
bho  Bordetella holmesii ATCC 51541
Pathway
bho03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bho00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    D560_2129
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bho03019]
    D560_2129
Messenger RNA biogenesis [BR:bho03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Others
     D560_2129
SSDB
Motif
Pfam: NUDIX NUDIX_4
Other DBs
NCBI-ProteinID: AHV91586
Position
1988651..1989220
AA seq 189 aa
MLDREGYRPNVGIILVNGKNEVFWGKRIREHAWQFPQGGIKYGESPVQAMYRELHEEVGL
KPEHVRILGRTRDWLRYNVPDHFVRREWRGHYKGQKQIWFLLRLVGRDSDVCLRSTQHPE
FDAWRWSQYWVPLDAVIEFKRDVYTQALNELATILFRRHHETRYLRQRVHGPRSSDNSAE
TDGHAHIAG
NT seq 570 nt   +upstreamnt  +downstreamnt
atgcttgatcgcgaaggctaccgccccaatgtcggcatcattctcgtcaacggtaaaaac
gaggtcttttggggtaagcgaatccgggagcatgcctggcaattcccgcagggcggcatc
aaatatggcgaaagcccggtgcaggccatgtatcgcgaactccatgaggaagtgggcctc
aagcccgagcatgtccgtattttggggcgtacacgtgactggttgcgttataacgtgccg
gatcacttcgtccggcgtgagtggcgtggccactataaaggacaaaagcagatttggttc
ctgctgcgcctggttgggcgcgacagcgacgtatgcctgcgctcgacgcagcatccggag
ttcgacgcctggcgctggagccagtattgggtgcccttggacgcggtgatcgagttcaag
cgcgatgtttacacacaggccttgaacgagctggctacgatcctgttccgcaggcatcac
gaaacgcgctatttgcgccagcgtgtgcacggacctcgctcttctgataattccgcggaa
acagacggacatgcgcatattgctggttga

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (4)   
   KEGG COMPOUND (4)   
Chemical reaction (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (14)   

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