KEGG   Bradyrhizobium icense: LMTR13_16700
Entry
LMTR13_16700      CDS       T04485                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
bic  Bradyrhizobium icense
Pathway
bic03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bic00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    LMTR13_16700
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bic03021]
    LMTR13_16700
   03400 DNA repair and recombination proteins [BR:bic03400]
    LMTR13_16700
Enzymes [BR:bic01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     LMTR13_16700
Transcription machinery [BR:bic03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     LMTR13_16700
DNA repair and recombination proteins [BR:bic03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      LMTR13_16700
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Biotin_lipoyl_2 RPOC_hybrid RnfC_N ApbA_C
Other DBs
NCBI-ProteinID: ANW01561
UniProt: A0A1B1UFQ2
Position
3575643..3579842
AA seq 1399 aa
MNQEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGLLLDMTLKDLERILYFEYYVVLEPGLTALKDRQLLSEDEYLKAQDEYGQDSFTA
MIGAEAIRELLKGLELEKLEQSLRAEMQETESDIKHKKLAKRLKIVEAFRYSGNKPEWMI
LTVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG
PELRLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIMREGLPGEGKIFGDMAELEHALH
SKVIHLHTKIKYRWEGTDEDGKATKRWIETTAGRVMLGNVLPKNAKISYDIINKLMTKRE
ISGVIDQVYRHCGQKETVIFCDRIMALGFYNAFKAGISFGKDDMVVPHSKWKIVDTTRTL
AKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKEMMKEISSTKKTPKGADADINSIYM
MAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIITQDDCGTKLGIKMRAIVDAGTVVASLGSRILGRVA
GEDLRDPATNKVVVKRGTLMEESHVDAIQQAGIQEVKIRSALTCELVNGICGKCYGRDLA
RGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQINEQSFVESNFEGKVTIKNKSI
ARNSEGHLIAMVRNMVVAIVDADGTERATHRIQYGARMHVDEGDMVKRGQRIAEWDPYTR
PVLTEVEGTIGFEDLVEGQSISETLDESTGIAKRVVIDWRASRGGADLRPAIVVKGKDGK
VLKLARGGDARYMLSVDAILSVDTGAKVKAGDILARISTESAKTRDITGGLPRVAELFEA
RKPKDAAIIAEIAGTIRFGRDYKNKRRISIEPMDKTEEPREYLIPKGKHIHLQDGDIVEK
GDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEI
TDQGDTDMISGEQVDKIEFDALNLKAKEEGKKPATGTPVLLGITKASLQTRSFFSAASFQ
ETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIREVAVKRDKLILDEREKQ
AAIVPTAPEAEPLALPPAE
NT seq 4200 nt   +upstreamnt  +downstreamnt
atgaaccaagaaattatgaatctcttcaatccgacgaccccggcccaggtcttcgaccag
atccggatctcgattgcgtccccggagaagattctgtcctggtcctacggcgagatcaaa
aagccggagaccatcaactaccggaccttcaagccggagcgcgacggcctgttctgcgcc
cgcatcttcgggccgatcaaggactacgagtgcttgtgcggcaagtacaagcggatgaag
tacaagggcatcatctgcgaaaagtgctcggtcgaagtgacgctgtcgcgcgtccggcgc
gagcgcatgggccatatcgaactggcggcgcccgtcgcccacatctggttcctgaagtcg
ctgccgtcccgtatcggccttctgctcgacatgacgctgaaggatctcgagcggatcctg
tacttcgaatactacgtcgtgctggagccgggcctgaccgcgctcaaggaccgtcagctc
ttgtcggaagacgagtacctgaaggcgcaggacgagtacggccaggattcgttcaccgcc
atgatcggcgcggaagcgatccgcgagctgctgaagggtctcgagctcgaaaagctcgag
cagtccctgcgtgccgagatgcaggagactgaatccgacatcaagcacaagaagctcgcc
aagcgcctgaagatcgtcgaggcgttccgctattccggcaacaagccggagtggatgatc
ctgaccgtggtgccggtgatcccgccggacctgcgtccgctggtgccgctcgacggcggc
cgcttcgcgacctcggacctcaacgacctctaccgccgcgtcatcaaccgcaacaaccgc
ttgaagcggctgatggagctgcgcgcgcccgacatcatcatccgcaacgaaaagcgcatg
ctgcaggaggctgtcgacgcgctgttcgataacggccgccgcggccgcgtcatcaccggc
gccaacaagcgcccgctgaagtcgctggccgacatgctcaagggcaagcagggccgcttc
cggcagaacctgctcggcaagcgcgtcgactattcgggccgttcggtgatcgtggtcggt
cccgagctgcggctgcatcaatgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctattcgcggctcgacgccaagggtctgtccaccaccgtgaagcaggcgaag
aagctggtcgagaaggagcgtcccgaggtctgggatattctcgacgaggtgatccgcgag
catccggtgctgctcaaccgcgcgccgacgctgcatcgcctcggcatccaggcgttcgag
ccggtgttgatcgaaggcaaggcgatccagctccatccgctggtttgcgcggcgttcaac
gccgacttcgacggcgaccagatggccgtgcacgttccgctgtcgctggaagcgcagttg
gaagcgcgcgtcctgatgatgtcgaccaacaacatcctgcatcccgcgaacggccagccg
atcatcgttccgtcgcaggacatcgtgctcggactctattatctctcgatcatgcgcgaa
ggcctgcccggcgagggcaagatcttcggcgacatggccgagctcgagcacgccctgcat
tcgaaagtcatccacctccataccaagatcaagtaccggtgggagggtaccgacgaggac
ggcaaggcgaccaagcgctggatcgaaaccaccgcgggccgcgtcatgctcggcaatgtg
ctgccgaagaacgcgaagatttcgtacgacatcatcaacaagctgatgaccaagcgcgaa
atctccggcgtgatcgatcaggtctaccgccactgcggccagaaggagacggtgatcttc
tgcgaccgcatcatggcgctcggcttctacaatgcgttcaaggccggcatctcgttcggc
aaggacgacatggtggtgccgcacagcaagtggaagattgtcgacaccacccgtacgctg
gcgaaggatttcgagcagcagtacaacgacggcctgatcacccatggcgagaagtacaac
aaggtggtcgacgcctggtcgaaggcgaccgaagaaatcgccaaggagatgatgaaggaa
atctcctcgaccaagaagacgccgaagggtgccgacgccgacatcaactcgatctacatg
atggcgcattcgggcgcgcgcggttcgccggcgcagatgcgtcagctcgccggtatgcgc
ggcctgatggcgaagccgtcgggtgagatcatcgagacgccgatcatttctaacttcaag
gaaggtctgtcggtgctcgaatacttcaactcgacccacggcgcccgcaagggtctcgcg
gataccgcgttgaagaccgcgaactccggttacctgacacgccgcctggtcgacgtggcg
caggactgcatcatcacgcaggacgattgcggcaccaagctcggcatcaagatgcgcgcc
atcgtcgacgccggtacggtggtcgcttcgctgggttcgcgtattctcggccgcgtcgcg
ggcgaggatctgcgcgatcccgcgaccaacaaggtcgtggtcaagcgcggcacgctgatg
gaagagtcgcatgtcgacgccatccagcaggccggcatccaggaggtgaagattcgctcg
gcgctgacctgcgaactcgtcaacggcatctgcggcaagtgctacggccgcgatctggcc
cgcggcacgccggtcaaccacggcgaggcggtcggcgtcatcgccgcccagtcgatcggt
gaacccggcacgcagctcacgatgcgcacgttccacatcggcggcgcggcgcagatcaac
gagcagtcgttcgtcgaatcgaacttcgagggcaaggtcaccatcaagaacaagtccatc
gcccgaaacagcgaaggtcacttgatcgcgatggtgcgcaacatggtcgttgcgatcgtc
gatgccgacggaaccgagcgtgcgactcaccgcattcagtacggcgcgcgcatgcacgtc
gacgagggcgacatggtcaagcgcggccagcgcatcgcggagtgggatccgtacacccgt
ccggttctcaccgaagtcgagggcaccatcgggttcgaggacctggtcgaggggcagtcg
atctcggaaacgctcgacgaatccaccggtatcgccaagcgcgtcgtcatcgactggcgt
gcgtcgcgcggcggggccgatctgcgtccggccatcgtggtcaagggcaaggacggcaag
gtgctcaagctcgcgcgtggcggcgatgcccgctacatgctgtcggtcgacgccatcctg
tcggtggataccggcgcgaaggtcaaggccggcgacatcctggcgcgtatctcgaccgaa
agcgccaagacccgcgacatcaccggcggtctgccgcgggtggccgagctgttcgaggcc
cgcaagccgaaggacgcggccatcatcgcggaaatcgctggcacgatccgcttcggccgc
gactacaagaacaagcgccgcatctcgatcgagccgatggacaagaccgaggagccacgc
gagtacctgatcccgaagggcaagcacatccatctgcaggacggcgacatcgtcgaaaag
ggcgatttcatcgtcgaaggcaatccggcgccgcacgacatcctggcgatcaagggcatc
gaggaactcgctgcctatctggtcaacgaaatccaggaggtctaccggctgcagggcgtg
ctcatcaacgacaagcacatcgaggtgattgtccgtcagatgctgcagaaggtcgagatc
accgaccagggcgacaccgacatgatctcgggcgagcaggtcgacaagatcgagttcgac
gcgctcaacctgaaggcaaaggaagagggcaagaagcccgccacgggaacgccggttctg
ctcggcatcaccaaggcgagcctgcagactcgctcgttcttctcggcggcctcgttccag
gagaccacccgcgtgctcaccgaagccgccgtcaacggcaaggtggatccgctggaaggc
ctcaaggaaaacgtcattgtcggccggctgatcccggcgggcaccggcgcctcgatggcc
aagatccgcgaagtcgccgtcaagcgcgacaagctgatcctggacgaacgcgagaagcag
gcggcgatcgtgccgaccgctccggaagcggaaccgctggcgctgccgccggcggagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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