KEGG   Beijerinckia indica: Bind_3567
Entry
Bind_3567         CDS       T00688                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bid  Beijerinckia indica
Pathway
bid03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bid00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Bind_3567
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bid03021]
    Bind_3567
   03019 Messenger RNA biogenesis [BR:bid03019]
    Bind_3567
Transcription machinery [BR:bid03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Bind_3567
Messenger RNA biogenesis [BR:bid03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Bind_3567
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA_22 NACHT AAA_25 ATPase_2 Spore_III_AA AAA AAA_14 DUF6360
Other DBs
NCBI-ProteinID: ACB97124
UniProt: B2IG50
Position
complement(4046230..4047498)
AA seq 422 aa
MREIKLQDLKLKSPTELLAFAEEHEVENASIMRKQELMFAILKQLASREVEIIGEGVIEV
LQDGFGFLRSPEANYLAGPDDIYVSPSQIRRFGLRTGDTVEGLIRSPKEGERYFALLKVN
TINFEDPEKIRHKVHFDNLTPLYPDERLKLEIDDPTKKDLSARVIDIVAPIGKGQRALIV
APPRTGKTVLLQNIAQSVTANHPECYLIVLLIDERPEEVTDMQRSVKGEVISSTFDEPAV
RHVQVAEMVIEKAKRLVEHGRDVVILLDSITRLGRAYNTVVPSSGKVLTGGVDANALQRP
KRFFGAARNIEEGGSLTIIATALIDTGSRMDEVIFEEFKGTGNSEIILDRKVADKRVFPA
IDITRSGTRKEELLVPTDVLKKMYVLRRILNPMGTVDGIEFLLGKLRETPKGNATFFEAM
NT
NT seq 1269 nt   +upstreamnt  +downstreamnt
atgcgggaaatcaagctgcaagacttgaaactcaagtcgccgaccgaattattggccttt
gccgaggaacacgaggtggaaaacgcctcgatcatgcgcaaacaggaattgatgtttgcg
atcctcaaacaattggcgagccgtgaggtcgagatcatcggcgagggcgtcatcgaggtc
ctgcaggacggctttggctttctgcgttcgccggaagccaattatctcgcgggtcccgac
gatatttatgtctctccctcgcaaatacggcgctttggcctgcgcaccggtgacaccgtc
gaggggttgatccgcagccccaaggaaggcgaacgttattttgcgctgctcaaggtcaat
acgatcaatttcgaggacccggagaaaatccgccacaaggtccatttcgacaatctgacg
ccgctctatcctgatgaaaggctgaagctcgaaatcgatgatccgaccaagaaggatctt
tcggcgcgcgtcatcgatattgtcgcgccaatcggcaagggccagcgcgctttgatcgtt
gccccgccacgcaccggtaaaaccgtgctgttgcagaatatcgcgcaatccgtgaccgcc
aatcatcccgaatgctatctgatcgttctgctgatcgatgaaaggccggaagaagtcacc
gatatgcagcgttcggtgaagggcgaggtcatttcctccacctttgacgagccggcggtg
cgccatgttcaggtcgccgaaatggtgatcgaaaaagccaaaagattggtggagcatggc
cgcgacgtggtgatccttctggattccatcacgcgtttgggtcgcgcttataatacggtc
gtgccgtcatcgggcaaggttctgaccggcggtgttgacgccaatgccttgcaacgtccg
aaacggttttttggtgccgcccgtaatatcgaggaaggcggttcgctgaccattatcgcg
acggccctgatcgatacgggttcgcgcatggatgaagtgattttcgaggaattcaaagga
accggcaattcggaaattatcctcgaccgcaaggtggccgacaaacgcgtgttcccggcg
atcgatatcacgcgctccggcacccgcaaggaagagctgctggtgccaaccgatgttttg
aagaaaatgtatgtattgcggcgtatcctcaacccaatgggtacggtcgatggcatcgag
ttcctgctcggcaaattgcgcgagaccccaaagggcaatgctactttcttcgaggccatg
aatacataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   RefGene (3)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (12)   
   Pfam (12)   
All databases (24)   

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