KEGG   Bacillus infantis: N288_21565
Entry
N288_21565        CDS       T02860                                 
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
bif  Bacillus infantis
Pathway
bif03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bif00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    N288_21565
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bif03019]
    N288_21565
   03016 Transfer RNA biogenesis [BR:bif03016]
    N288_21565
Enzymes [BR:bif01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     N288_21565
Messenger RNA biogenesis [BR:bif03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     N288_21565
Transfer RNA biogenesis [BR:bif03016]
 Prokaryotic type
  tRNA degradation factors
   N288_21565
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 MarR_2
Other DBs
NCBI-ProteinID: AGX06158
UniProt: U5LFF9
Position
complement(3956195..3958537)
AA seq 780 aa
MENNIKQIVDKLLHFMKDEAYKPLTVQEMEEAFGIEDSSDFKDFVKALVVMEQKGLVVRT
RSNRYGLPDRMNLIKGKLSGHAKGFAFVIPEEPGLDDIFIPPNETNNAMHGDIVLARVSS
ESSGQRREGTVVRILERGVQQIVGTYVESKNFGFVLPDDKKFTSDIFIPKSASKGAIEGH
KVVVKLTTYPEGRKSAEGEVLEILGHKNDPGVDILSVIHKHGLPMEFPKEVLEQANDTPD
SIDESEIKNRRDLRDQTIVTIDGADAKDLDDAVTVTKLENGNYKLGVHIADVTYYVRENT
PIDQEAEERATSIYLVDRVIPMIPHRLSNGICSLNPQVDRLTLSCEMEMDSSGEVVNHEI
FQSVIKTTERMTYHDVNKILTDKDEELMKRYEPLVPMFQLMEELAAVLRKKRMGRGAIDF
DFKESKVLVDEEGKPSDVVLRERSVAERLIEEFMLAANETVAEHFHWMDVPFIYRIHEDP
KEDKLRRFFEFITNFGYIVKGTANSVHPRALQEIIEEVQGTPEEMVISTVMLRSMQQAKY
DPESLGHFGLSTEFYTHFTSPIRRYPDLVVHRLIRTYLIEGDLSQATRERMNSRLPDIAE
HSSNMERRAVEAERETDELKKAEYMADKIGEEYDGIISSVTNFGMFVELPNTIEGLIHVS
YMTDDYYRYDERHFAMIGEKTGNVFRIGDEITVRVINVNKDERSIDFEIVGMKGPRKRDD
RDAPRVFKTGSTEKKPRRGKAGEGPKGRSGSSKGKSGGPARKEKKHFENAPKAKRKKKKR
NT seq 2343 nt   +upstreamnt  +downstreamnt
atggaaaataatattaagcaaatcgtggataagcttctccactttatgaaagatgaagca
tataagccactgaccgtccaggagatggaagaggcattcggaatcgaggattcttccgat
tttaaagactttgtgaaggcccttgtggtcatggagcagaaagggcttgttgtccggaca
cggagcaaccgctacggcctgccggacaggatgaatctgatcaaaggtaagctgtccggc
catgcaaaaggctttgcttttgtcattcctgaagagcctggccttgatgatatctttata
ccgccgaatgagacgaataatgctatgcatggcgatattgtccttgcaagggtttcttct
gaatcttccggccagaggcgtgaagggacggtcgtgcgcattctcgaacgaggtgtccag
cagattgtcgggacatatgttgaaagtaaaaatttcggctttgtgctcccggacgacaaa
aagttcaccagcgatatttttatcccgaaatcagcttctaaaggggcaatagaaggacat
aaggtcgttgtcaagctgacgacgtatccggaggggcgcaagagtgctgaaggggaagtc
cttgagatccttggccataaaaatgatccaggcgtggatatcctgtctgtcatccacaaa
catgggctgccgatggaattcccgaaagaagtgctggagcaggcgaatgatacacctgac
agcattgatgaaagtgaaatcaagaaccggcgcgatctccgcgaccagacaatcgtcacg
attgacggcgctgatgcgaaggacctggatgatgcggtaactgttactaagcttgaaaac
ggaaactataagctcggagtacatattgccgatgtgacgtattatgtgcgcgagaataca
ccgatcgatcaggaagcggaagaacgggcgacaagtatttacttggtggaccgggtcatc
ccgatgatcccgcacagattatccaatggcatctgttcccttaatccgcaggttgaccgc
ctgaccctttcctgtgaaatggaaatggacagctccggtgaagtggttaatcatgaaatc
ttccagagtgtcattaaaacgacagagcgtatgacttatcatgacgttaacaagatcttg
accgataaagacgaagagctgatgaagcgctatgagccgcttgtcccgatgtttcagctt
atggaagagctggcagcggtgctccgcaagaaacggatgggccgcggcgccatcgacttt
gattttaaagagtcaaaggttcttgttgatgaagaaggaaagccaagtgatgtcgtactc
cgcgaacgttctgtggcagagcgcctcatcgaggaattcatgcttgcagccaatgaaacg
gtcgccgagcatttccattggatggatgtgccgttcatctaccgtattcacgaagatccg
aaggaagataagctgagaagattcttcgagtttattacaaacttcggttacattgtaaaa
ggcacggcaaactctgtgcatccgcgcgccctccaggaaatcattgaagaggtgcagggt
acacctgaggaaatggtaatttcgaccgtcatgctgcgttcgatgcagcaggcgaaatat
gatcctgagagcctcggccactttgggctgtcgactgagttctatactcatttcacatca
ccaatccgccggtatccggacttggttgtccacaggctcatccgcacctatctgattgaa
ggcgatttaagccaggcgacaagagagcggatgaattcaaggcttcctgatattgccgag
cattcctccaatatggagcgccgcgcggtcgaagctgaaagggaaacagatgagctgaag
aaagcagaatatatggctgataaaattggcgaagaatatgatggcatcatcagctcagtt
acaaacttcggcatgttcgtcgaattgccgaacacgattgaaggtctgatccatgtcagc
tatatgacggacgattattaccgctatgatgaacgccatttcgcgatgatcggcgagaaa
accggcaatgtgttccggattggcgacgaaattacagtacgcgtcattaatgtcaacaaa
gatgagcgctccatagattttgaaatcgtcggcatgaaaggcccccggaagcgtgatgat
cgggatgcgccgcgagtgttcaagacgggcagcacagaaaagaagccgcgcagaggcaaa
gcaggcgaaggcccaaaaggacgcagcggcagctcgaaaggcaaaagcggcggacctgcc
cggaaagagaaaaagcactttgaaaatgcgccaaaagccaagcgtaagaaaaagaaacgc
taa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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