KEGG   Bacillus infantis: N288_23865
Entry
N288_23865        CDS       T02860                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bif  Bacillus infantis
Pathway
bif03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bif00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    N288_23865
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bif03021]
    N288_23865
   03019 Messenger RNA biogenesis [BR:bif03019]
    N288_23865
Transcription machinery [BR:bif03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     N288_23865
Messenger RNA biogenesis [BR:bif03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     N288_23865
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB AAA AAA_22 ATPase_2 AAA_25 Mor Spore_III_AA NACHT
Other DBs
NCBI-ProteinID: AGX06609
UniProt: U5LFG4
Position
complement(4500054..4501328)
AA seq 424 aa
MGLNISSLENMKLKELYELAREYKVSYYSKLTKKELIFAILKARAEQEGYFFMEGVLEII
QSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYFGLLQVEAV
NGDDPESAKERVHFPALTPLYPDRQMKLETTPKHVSTRIMDVLAPVGFGQRGLIVAPPKA
GKTMLIKEIANSITTNHPEAELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIKV
AELVLDRAMRLVEHKRDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFFG
AARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRQLAERRIFPAIDIRR
SGTRKEELLIPKEHLDKLWAIRKSMSDAPDFAEKFLRKLKQTKSNEEFFANLGEEMKNGR
RSQS
NT seq 1275 nt   +upstreamnt  +downstreamnt
atgggattaaatatatccagtttagaaaatatgaagttaaaagagctctatgaacttgcc
cgggaatataaagtttcctactacagcaagctgacaaagaaagagctgatttttgccatc
ctgaaagcccgcgctgagcaggaaggctactttttcatggaaggcgtgctggagatcatc
cagtctgagggctttggcttcctaaggccgatcaattactcgccaagctcagaggatatc
tacatttccgcatcgcaaatcaggagatttgatctaaggaacggagataaagtatccgga
aaagtccgcccgccaaaggaaaatgaacgctatttcggcctcctgcaggttgaagctgtc
aatggagacgatccggaatctgccaaggagcgtgtccacttcccggctttgacgccttta
tatcctgataggcagatgaagctggaaacaacgccgaagcatgtgtccacaaggatcatg
gacgtacttgcaccggttggattcggccagcgcggactgattgtcgctccgccaaaagcg
ggtaaaacgatgctgataaaggaaatcgccaacagcatcacgacgaatcatcctgaggca
gagctgattgttctcctcattgatgagcgcccggaagaagtgactgatattgaacgttct
gttgccggtgatgtcgtcagctcgacatttgacgaagtgcccgaaaaccatattaaagtg
gccgagcttgtccttgaccgggcaatgcgcctcgtggagcataaacgggatgtcatcatc
ctcatggacagcatcacaaggcttgctcgtgcttataacctggtcatcccgccaagcgga
cgtacgctgtccggggggattgaccctgcagcattccaccgtccgaagcgtttcttcggg
gcggcgaggaatattgaagaaggcggaagcctgaccatcctagcaacagcccttgttgat
accggctcacggatggatgatgtcatttacgaagagttcaagggaacaggaaacatggag
cttcaccttgaccgccagcttgcagagcgccgtattttcccggccatcgatatccgccgt
tcaggtacacggaaagaagagctgcttattccgaaagagcatctggacaagctgtgggcg
atcaggaagtcgatgtcggatgcgcctgattttgctgagaagttcctccgcaagctgaag
cagacgaaatccaatgaagagttctttgccaatctcggcgaagaaatgaagaacggcagg
cgttcccaatcctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (20)   

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