KEGG   Brachyspira intermedia: Bint_1341
Entry
Bint_1341         CDS       T01847                                 
Name
(GenBank) RNA polymerase sigma factor WhiG
  KO
K02405  RNA polymerase sigma factor FliA
Organism
bip  Brachyspira intermedia
Pathway
bip02020  Two-component system
bip02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:bip00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    Bint_1341
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    Bint_1341
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bip03021]
    Bint_1341
  09183 Protein families: signaling and cellular processes
   02035 Bacterial motility proteins [BR:bip02035]
    Bint_1341
Transcription machinery [BR:bip03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     Bint_1341
Bacterial motility proteins [BR:bip02035]
 Flagellar system
  Flagellar assembly proteins
   Stator
    Bint_1341
SSDB
Motif
Pfam: Sigma70_r4 Sigma70_r2 Sigma70_r4_2 Sigma70_r3 HTH_23 UPF0122 DUF3839 HTH_24 Phage_antitermQ HTH_WhiA GerE
Other DBs
NCBI-ProteinID: AEM21960
UniProt: G0EP90
Position
1514416..1515243
AA seq 275 aa
MNIMKMNKKDKDKIPNITNENEQEYWLEFKKTLSPYIREALIIKYSPLVKYVASKISVNM
GSHKHIEFQDLVGFGSFGLMDAIDKYNPNRDIKFKTYAVTRIRGAIYDELRKLDYLPRSI
RKDVKEIEKAREILEARLSRNIKPQEIADMLGIPISKYNETMKRYIEASPTSLSDVWYVG
DDSDEISVIDTLKSNDKTNPEYLAEREDVKNKIIAALKKLPEKEQQVLILYYYDDLTLKE
IGKVLDVSESRISQLHTKAIQQLRYSLSEIKKQLL
NT seq 828 nt   +upstreamnt  +downstreamnt
gtgaatattatgaagatgaataaaaaagacaaagataaaataccaaatattactaatgag
aatgagcaggaatattggcttgagtttaaaaagactctttcgccttatataagagaagct
ctaattattaaatattctcctttagtaaaatatgtggcaagcaagatatctgtgaatatg
ggttctcataagcatattgaatttcaagatttagttggatttggttctttcggacttatg
gatgctattgataaatataaccctaatagagatattaagtttaaaacttatgctgttact
agaatcagaggggcaatatatgatgagcttagaaaattagattatcttcctagatctatt
cgtaaagatgttaaggaaatagaaaaggcaagagaaatattagaagctagattaagcaga
aacataaagcctcaggaaatagcagatatgcttggaatacctataagtaaatataatgaa
actatgaaaagatatatagaggcttctcctacctctttaagcgatgtttggtatgtaggc
gatgattccgatgaaatatctgtaatagatacattgaaatcaaatgataaaaccaatccg
gaatatttagcagagagagaagatgttaaaaataaaataatagctgctttgaaaaaactt
cctgaaaaagagcagcaagttcttatattatattattatgatgaccttactttaaaagag
ataggcaaggtattagatgtttcagaaagcagaatatctcagcttcatacgaaggcaata
cagcagttaagatatagtctttctgagataaaaaaacaattattataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (21)   

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