KEGG   Bacillus spizizenii: BIS30_08260
Entry
BIS30_08260       CDS       T05513                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bit  Bacillus spizizenii
Pathway
bit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BIS30_08260
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bit03021]
    BIS30_08260
   03019 Messenger RNA biogenesis [BR:bit03019]
    BIS30_08260
Transcription machinery [BR:bit03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BIS30_08260
Messenger RNA biogenesis [BR:bit03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BIS30_08260
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB ATPase_2 AAA_22 AAA NACHT Spore_III_AA EZH2_WD-Binding AAA_25
Other DBs
NCBI-ProteinID: AJW85154
Position
complement(1558459..1559742)
AA seq 427 aa
MKDVSISSLENMKLKELYELARHYKISYYSKLTKKELIFAILKANAEQEDLLFMEGVLEI
IQSEGFGFLRPINYSPSSEDIYISASQIRRFDLRNGDKVSGKVRPPKENERYYGLLHVEA
VNGDDPESAKERVHFPALTPLYPDRQMVLETKPNFLSTRIMDMMAPVGFGQRGLIVAPPK
AGKTMLLKEIANSITANQPEAELIVLLIDERPEEVTDIERSVAGDVVSSTFDEVPENHIK
VAELVLERAMRLVEHKKDVIILMDSITRLARAYNLVIPPSGRTLSGGIDPAAFHRPKRFF
GAARNIEEGGSLTILATALVDTGSRMDDVIYEEFKGTGNMELHLDRSLAERRIFPAIDIR
RSGTRKEELLVPKEHLDRLWSIRKTMSDSPDFAEKFMRKMKKTKTNQEFFDILNQEWKQA
NLSSARR
NT seq 1284 nt   +upstreamnt  +downstreamnt
atgaaagacgtatctatttcatctttggaaaatatgaaattgaaagagctttatgaactt
gcaagacattataaaatctcctattacagcaaactgacaaaaaaagaactcattttcgcc
attctgaaagcaaatgcagaacaggaagatctgctgtttatggaaggtgttcttgagatc
atccagtccgaaggtttcggtttcctgagaccgatcaactactctccaagctcagaggac
atttacatctcagcttcacaaatccgccgtttcgatttgcggaacggagacaaagtatcg
ggcaaggttcgcccgccaaaagaaaatgagcgttactatggacttttgcacgttgaagca
gtaaacggggatgatcccgaatcagcaaaagagcgtgtgcatttcccggctcttacacct
ctttatccagaccgtcaaatggtgcttgaaacaaagccaaacttcttgtctacaagaata
atggacatgatggcaccggttggatttggacagcgcggtttgattgttgcgcctccaaaa
gccggaaaaacgatgctgctgaaggaaattgccaacagcattacagcaaaccagcctgaa
gcagagctcatcgtgcttttgatcgacgaaagaccagaggaagtgaccgatatcgagcgt
tccgtagctggggatgtcgttagctcaacgtttgatgaagtgccggaaaaccatattaaa
gtggccgagcttgtgcttgagcgcgcgatgcgtctcgtggaacacaaaaaagatgtcatc
atcctgatggacagcatcacacgccttgcccgcgcctacaacttagtgattccgccgagc
ggaagaacgctttctggggggattgatccagcagcgttccaccgtccgaaacgcttcttc
ggggctgcgagaaatatcgaagagggcggcagcttaactatccttgctacggctcttgtt
gatacagggtcacgtatggatgatgtcatttatgaagaattcaagggaacaggcaacatg
gagcttcaccttgaccgttctctggcagagcgccgcatcttcccggccatcgatatccgc
cgttcgggaacgcgcaaggaagagctgcttgtgcctaaagagcaccttgatcgtttatgg
tctatccgcaaaacgatgtctgattcacctgatttcgcagaaaaattcatgagaaaaatg
aaaaaaaccaaaacaaaccaggaatttttcgatattctcaatcaagaatggaaacaggca
aatctatcatctgctagacgataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (11)   
   Pfam (11)   
All databases (19)   

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