KEGG   Bos indicus (zebu cattle): 109565659
Entry
109565659         CDS       T04792                                 
Symbol
NUP188
Name
(RefSeq) nucleoporin NUP188 homolog
  KO
K14311  nuclear pore complex protein Nup188
Organism
biu  Bos indicus (zebu cattle)
Pathway
biu03013  Nucleocytoplasmic transport
biu05014  Amyotrophic lateral sclerosis
Brite
KEGG Orthology (KO) [BR:biu00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    109565659 (NUP188)
 09160 Human Diseases
  09164 Neurodegenerative disease
   05014 Amyotrophic lateral sclerosis
    109565659 (NUP188)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:biu03019]
    109565659 (NUP188)
Messenger RNA biogenesis [BR:biu03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     109565659 (NUP188)
SSDB
Motif
Pfam: Nup188_N-subdom_III Nup188_N Nup188_SH3-like Gar1
Other DBs
NCBI-GeneID: 109565659
NCBI-ProteinID: XP_019825121
UniProt: A0A6P5CGQ0
Position
11:103194082..103237395
AA seq 1818 aa
MLAPPPHPRDENPVHALEARGHSPHFNEKGGDRNTKLKHLLGIEDVLYFINYYVSLILKY
TFFFPKEKTYLCFLSFFRSSRELWTILLGRSALRELNQIEAELNKHWQRLLEGLSYYKPP
SPSSAEKVKASKDVASPLKELGLRISKFLGLDEEQSVQLLQCYLQEDYRGTRDSLKTVLQ
DERQSQALILKIADYYYEERTCILRCVLHLLTYFQDERHPYRVEYADCVDKLEKELVTKY
RQQFEELYKTEAPTWETHGNLMTERQVSRWFVQCLREQSMLLEIIFLYYAYFEMAPSDLL
VLTKMFKEQGFGSRQTNRHLVDETMDPFVDRIGYFSALILVEGMDIESLHKCALDDRREL
HQFAQDGLICQDMDRLMLTFGDIPHHAPVLLAWALLRHTLNPEETSSVVRKIGGTAIQLN
VFQYLTRLLRSLASGGNDCTTSTACMCVYGLLSFVLTSLELHTLGNQQDVIDTACEVLAD
PSLPELFWGTEPTSGLGIILDSVCGMFPHLLSPLLQLLRALVSGKSTAKKVYSFLDKMSF
YNELYKHKPHDVISHEDGTLWRRQTPKLLYPLGGQTNLRIPQGTVGQVMLDDRAYLVRWE
YSYSSWTLFTCEIEMLLHVVSTADVIQHCQRVKPIIDLVHKVISTDLSIADCLLPITSRI
YMLLQRLTTVISPPVDVIASCVNCLTVLAARNPAKVWTDLLHTGFLPFVAHQVSSMSQMI
SAEGMNAGGYGNLLMNSEQPQGEYGVTVAFLRLITTLVKGQLGSTQSQGLVPCVMFVLKE
MLPSYHKWRYNSHGVREQIGCLILELIHSILNLCHETDLHSSHTPSLQSLCICSLAYTEA
GQTVINIMGIGVDTIDMVMAAQPRSDGAEGQGQGQLLIKTVKLAFSVTNNVIRLKPPSNV
VSPLEQALTQHGAHGNNLIAVLAKYIYHKHDPALPRLAIQLLKRLATVAPMSVYACLGSD
AAAIRDAFLTRLQSKIEDMRIKVMILEFLTVAVETQPGLIELFLNLEVKDGSDGSKEFSL
GVWSCLHAVLELIGSQQQDRYWCPPLLHRAAIAFLHALWQDRRDSAMLVLRTKPKFWENL
TSPLFGTLSPPSETSEPSILETCALIMKIICLEIYYVVKGSLDQSLKDTLKKFSSEKRFA
YWSGYVKSLAVHMADTEGSSCTSLVEYQMLVSAWRMFLIIATSHAEITHLTDSAVRRQLF
LDVLEGTKALLLVPTSVNCLRLGSMTCTLLLILLRQWKRELGSVDEILGPLTEILEGVLQ
ADQQLMEKTKAKVFSAFITVLQMKEMSVNDIPQYSQLVLNVCETLQEEVIALFDHTRHSL
AAGSATEDKDSMETDDCSRLRHRDQRDGVCVLGLHLAKELCEVDEDGDSWLQVTRRLPIL
PTLFTTLEVSLRMKQNLHFTEAALHLLLTLARTQQGATAVAGAGITQSICLPLLSVYQLS
TNGTVQTPGTSRKSLDAPSWPGVYRLSMSLMERLLKTLRYNFLTEALDFVGVHQERTLQC
LNAVRTVQSLACLEEADHTVGFLLQLSSFRKEWHFHLPQLMRDVQVNLGYLCQACTSLLH
SRKMLQHYLQNKNGEGIPSAVAPRAQRPSAAALAAPSCSSSKQPAPDTEASEQRALRTVQ
YGLLRILSRTLAALRRFTPDVCQVLLDQSLDLAEYSFLFALSFTTPTFDSEGAPSFGTLL
ATVNVALNMLGELDKKKEPLTQAVGLSTQAEGTRTLKSLLMFTMENCFYLLISQAMRYLR
DPAVHPRDKQRMKQELSSELSTLLSSLSRYFRRGAPSSPAAGVLPSPQGKSTSLSKVSPE
SQEPLIQLVQAFVRHVQR
NT seq 5457 nt   +upstreamnt  +downstreamnt
atgttggccccgcccccacatccacgtgacgaaaacccggttcacgccctggaagcgcgc
ggtcactcaccacattttaatgaaaagggaggagacagaaatactaaattgaagcatctt
cttggcatagaagatgtactgtatttcattaattactatgtttcattaattctaaaatat
actttttttttcccaaaagagaaaacttacctctgctttctatcatttttcaggagcagt
agagaactgtggacaattctgctaggaaggtcagctctgagagaactgaatcagattgag
gcagagctgaataaacattggcagcggctgttagaaggactttcttactataaacctccc
agtccaagttcagctgaaaaagtgaaagctagtaaagatgtagcttcaccactgaaggaa
ctgggtttaagaatcagcaagtttttgggtcttgatgaagaacagagtgtgcagttactc
cagtgttaccttcaagaggattacagaggtactcgggactcactaaagacggtgctgcaa
gatgagaggcagagccaggccttaatcctgaagattgcagattattactatgaagaaaga
acctgtattcttcgttgtgtcttacaccttctcacttatttccaagatgaaagacacccc
tatagggttgaatatgccgactgtgtggataaattggaaaaggagctagttacaaaatat
agacagcagtttgaagagctttataaaactgaagcaccaacgtgggagacacatggaaac
ctcatgactgagcgccaggtgtctcgctggtttgttcagtgccttcgggagcagtccatg
ctgctagaaattattttcctatattatgcatactttgagatggcacctagtgacctattg
gtgttaaccaagatgtttaaagagcaaggatttggtagtaggcagactaacaggcacctg
gtagatgagaccatggatccttttgtggatcggattggctacttcagtgcccttattctg
gtggaaggcatggacattgaatccttgcataagtgtgctttggatgacagaagagaactg
caccagtttgcccaggatggacttatttgtcaggatatggaccgtttgatgttgaccttt
ggggacattccgcatcatgccccagtgcttttggcatgggccctcctccgtcacaccctg
aatccagaagagacaagcagcgtggtccggaagataggggggacagccatccaactgaac
gtctttcagtacttgacccgactgctccgctcgctggccagtgggggaaatgactgtacc
accagcactgcctgcatgtgtgtctacggactcctttcttttgtcctgacctccctggag
ctgcacaccctgggcaatcagcaggatgtaattgacacagcatgtgaagtcctggcagac
ccttctctcccagaactgttctggggaacagaaccaacctctggtctcgggatcattctr
gacagtgtatgtggaatgtttccccatctcctgtctccactcctgcagttgcttcgagcc
cttgtatcagggaagtctactgctaagaaggtgtatagtttcttggataagatgtctttc
tacaatgaactctataagcacaagccccatgatgtgatctcccacgaagatggaaccctt
tggcggaggcaaacacccaaactcctttaccctctagggggtcagaccaaccttcgcata
cctcaaggcacygtgggccaagtgatgctggacgatagggcctacctggtgcgctgggaa
tactcgtatagcagctggaccctcttcacctgcgagattgagatgctgctgcatgtcgtt
tccactgcagatgtgattcagcactgccagcgggtcaaacccatcatcgacctggtccat
aaggtcatcagtacagacctgtcgatagcagactgtctcctgcccatcacgtcccgcatc
tacatgctgctgcagcggttaacaacagtgatctccccgcctgtggatgtcatcgcttct
tgcgtcaattgcttgactgttttggctgcccggaacccagcaaaggtctggactgatctt
cttcacacaggcttcttgcctttcgtggcccaccaggtctccagcatgagtcagatgatc
agtgctgaggggatgaatgctggtgggtatggaaacctcttgatgaatagtgaacagccc
cagggcgagtatggggtcactgttgcctttctgcgcttgatcaccactcttgtgaagggg
cagcttggtagtacccagagccaagggctggtgccttgtgtcatgtttgtgctgaaggag
atgctgccaagttaccacaagtggcgatacaactcccatggtgtgagagaacagattggt
tgcctgatcctggagctgattcattcaatactgaacctgtgccatgagacagacctgcac
agcagtcacacccccagcctgcagtctctctgcatctgcagcctggcctacacggaagca
ggacagacagtaatcaatatcatgggcatcggtgtggacaccatcgacatggtcatggct
gctcagccccgcagcgatggggcagagggccagggccagggccagctgctgatcaagaca
gtgaagttggcgttctctgtcaccaacaatgtcattcggctgaaaccgccttctaatgtg
gtgtcccctctggaacaggctctcacacagcatggtgcccatgggaacaaccttattgct
gttcttgccaaatacatctaccacaaacacgacccagctctgcctcgtcttgctatccag
ctgctgaaacgtctggccacggtggcgcccatgtcagtgtacgcctgcctgggcagtgat
gcggctgccatccgagacgccttcctgacccgcctgcagagcaagattgaggatatgcgc
atcaaagtcatgattctggaattcctcacggttgctgtagagacgcagccaggcctcatt
gaactgtttctgaatctggaggtgaaggatggcagcgatggctccaaggaattcagcctc
ggggtgtggagctgtctccacgcggtgctggagctgatcggttcccagcagcaggaccgc
tactggtgccccccactgctgcaccgggcagccatcgcctttttgcacgccctgtggcag
gaccggcgggacagtgccatgctggtcctcagraccaaacccaagttttgggagaatcta
acgagtccgctatttggtacgctktctcctccctcggaaacatctgagcccagcatcctg
gaaacctgtgccctaatcatgaagataatttgcttggagatatactatgtagttaagggc
tcattagaccaatcattaaaagatacactcaagaaattttccagcgagaagcgctttgcc
tactggtcggggtatgtcaagtccttggcagttcacatggccgacacagagggcagcagc
tgcacctccctggtagagtatcaaatgctggtctctgcctggaggatgtttctcatcatt
gccaccagtcacgcggagataacgcacctgacagactctgcagtgcgtcgccagctcttt
cttgacgtgctcgaggggaccaaggcgttgctcctcgtccctacctccgtgaactgcctc
cgcctgggctccatgacgtgcaccctgctgcttattctcctccggcagtggaagagagag
ttagggtctgtggatgaaatccttgggcccctgacggagatcctggagggagtgctgcag
gcagaccagcagcttatggagaagaccaaggccaaggtgttctcggcgttcatcacrgtg
ctgcagatgaaggagatgagcgtgaatgacatcccccagtactcccagctggtgctgaac
gtctgtgagacccttcaggaagaggtgatcgcacttttcgaccacacccgccacagcctg
gcggcgggcagtgccaccgaggacaaggacagcatggagaccgacgactgctcccggctc
cggcacagggaccagcgggatggggtctgtgtcctgggcctgcacctggccaaggagctg
tgtgaggtggatgaggacggggactcgtggctacaggtgacccgccggctccccatcctg
ccgaccctcttcaccaccttggaggtgagccttcgcatgaagcagaacctgcacttcacc
gaggcggcgctgcacctgctyctcacgctggcccgcacccagcagggggccacggctgtg
gccggagccggcatcacccagagcatttgtttgcctctcctgagtgtgtaccagctcagc
accaacgggacagtgcagacacccggcacctctcggaagtccctggacgccccttcttgg
cctggcgtctaccgtctctccatgtccttgatggagcggctcctcaaaaccctgcgctac
aacttcctgaccgaggccctggacttcgtgggggttcaccaggagcggaccttacagtgc
ctcaacgccgtgaggacrgtgcagagtctggcgtgcctggaggaggccgaccataccgtg
ggcttcctcctacagctctccagcttcaggaaggagtggcacttccacctgcctcagctc
atgcgggatgtccaggtgaacctcggctacctgtgccaggcctgcacctccctcctgcac
agccgcaagatgctgcagcactacttgcagaacaaaaatggggagggcatcccctcagct
gtcgccccccgagctcagcggccatccgcagctgccctggctgccccctcctgctcctcc
tccaagcagcccgctcctgacacggaggcctcagagcagcgggccttgcgcaccgtccag
tatggcctcttgaggatcctcagcaggaccctggccgccctgcgccgcttcaccccmgat
gtctgccaggtcttgctggatcagtccctggaccttgctgagtacagcttcctgtttgcc
ctgagcttcaccactcccacttttgactccgaaggggccccctccttcgggacccttctg
gccactgtgaatgtggccctgaacatgcttggagagctggacaagaaaaaggagcctctc
acccaggctgtgggrctcagcacacaagcagaagggaccagaactctgaagtcgctcctg
atgttcaccatggagaactgcttctacctgctcatctcccaggcgatgcgttaccttcgg
gacccrgctgtgcacccccgggacaagcagcggatgaagcaggagctcagctcagagttg
agcactctcctctccagcctctcccgctacttccgccggggagcccccagctcccctgct
gctggcgtccttccctcgcctcagggcaagtccacctctctctccaaggtcagccccgag
agtcaggagcctctgatccagctggtgcaggcctttgtccgacacgtgcaaagatag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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