KEGG   Bradyrhizobium diazoefficiens USDA 110: bll4135
Entry
bll4135           CDS       T00109                                 
Symbol
rnd
Name
(GenBank) ribonuclease D
  KO
K03684  ribonuclease D [EC:3.1.13.5]
Organism
bja  Bradyrhizobium diazoefficiens USDA 110
Brite
KEGG Orthology (KO) [BR:bja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:bja03016]
    bll4135 (rnd)
Enzymes [BR:bja01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.5  ribonuclease D
     bll4135 (rnd)
Transfer RNA biogenesis [BR:bja03016]
 Prokaryotic type
  3'processing and CCA adding factors
   3'processing factors
    bll4135 (rnd)
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC
Other DBs
NCBI-ProteinID: BAC49400
UniProt: Q89MQ7
Position
complement(4571210..4572358)
AA seq 382 aa
MDLITTTADLAAACSRLAKHPVITVDTEFLRETTYYPLLCVVQMASPEEAIVIDTLAVGI
DLKPFFELMGNEAVLKVFHAARQDIEIIWHQANIIPHPVFDTQVAAMVLGYGDSIAYDQL
VEKVTGHRPDKTHRFTDWSRRPLTKEQMHYAVSDVTHLRDVFAALDADLKKRRRSEWVSI
EMEVLTSPRTYDFHPERAWERLKTRVRKPKDLAVLMEVAAWREQEAQSRDVPRGRVLRDE
AVSDIATHAPNTLEKLAHLRSVPKGFEKSKWGADIVAAVERGLARDFSTLPKLEKPRNNS
NGAAIVELLKVLLRMTAERHAVASKVIATVDDLEEIAASDEADVPALRGWRRELFGDAAL
KLKRGELALAIEKGRVIGVERA
NT seq 1149 nt   +upstreamnt  +downstreamnt
atggatttgattaccaccaccgctgaccttgcggctgcctgcagccgactggccaagcac
cccgtcattactgtcgataccgagttcctgcgcgagaccacctattacccgctgctgtgc
gtggtgcagatggccagccccgaggaagcgatcgtcatcgacaccctggccgtgggcatc
gacctcaagccgttcttcgagctgatgggcaacgaggccgtgctgaaggtgttccacgcc
gcccggcaggacatcgagatcatctggcaccaggccaacatcatcccgcatccggtgttc
gacacccaggtcgcggccatggtgctcggctatggcgacagcatcgcctacgaccagctg
gtcgagaaggtcaccggccaccgcccggacaagacccaccgcttcaccgactggtcgcgc
cgcccgctgaccaaggagcagatgcactacgcggtgtccgacgtcacccatctgcgcgac
gtattcgcggcgctcgatgccgacctgaagaagcgccgccgcagcgaatgggtctccatc
gagatggaggtcctgacctcgccccgcacctacgacttccaccccgagcgcgcctgggag
cggctgaagacgcgggtgcgcaagccgaaggacctcgcggtgctgatggaggtcgcggcc
tggcgcgagcaggaggcgcaaagccgcgacgtgccgcgcggccgcgtgctgcgcgacgag
gccgtcagcgacatcgccacccatgcgcccaacacgctggaaaagctcgcccatctgcgc
tcggtgccgaaggggttcgagaaatccaaatggggcgcggacatcgtcgccgcggtcgag
cgcggcctggcgcgggatttctcgacgctgccgaagctggagaagccgcgcaacaattcc
aacggcgcggccatcgtcgagcttttgaaggtcctgctgcggatgactgcggagcgccat
gcggtcgcaagcaaggtgatcgcgactgtcgacgatctcgaggagatcgcagccagtgac
gaggccgacgtccccgccctgcgcggctggcgccgcgagctgttcggcgatgccgcgctg
aagctgaaacgcggcgagctggcgctggcgatcgagaagggtcgcgtgatcggggtcgag
cgggcgtaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (20)   

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