KEGG   Bradyrhizobium diazoefficiens USDA 110: blr1883
Entry
blr1883           CDS       T00109                                 
Symbol
rpoN1
Name
(GenBank) RNA polymerase sigma-54 subunit
  KO
K03092  RNA polymerase sigma-54 factor
Organism
bja  Bradyrhizobium diazoefficiens USDA 110
Pathway
bja02020  Two-component system
bja02040  Flagellar assembly
Brite
KEGG Orthology (KO) [BR:bja00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    blr1883 (rpoN1)
 09140 Cellular Processes
  09142 Cell motility
   02040 Flagellar assembly
    blr1883 (rpoN1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bja03021]
    blr1883 (rpoN1)
Transcription machinery [BR:bja03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     blr1883 (rpoN1)
SSDB
Motif
Pfam: Sigma54_DBD Sigma54_CBD Sigma54_AID HTH_IclR
Other DBs
NCBI-ProteinID: BAC47148
UniProt: P30332
Position
2037374..2038828
AA seq 484 aa
MALTQRLEFRQSQSLVMSPQLMQAIKLLQLSNLDLMTFVEEELECNPLLERASDDAAGAE
APTEVDQVSGDQLAEAQVRDARDGAMTTYTEWGGGGSGDEDYNLEAFVASETTLSDHLAE
QLSVAFTAPAQRMIGQYLIDLVDEAGYLPPDLGQAAERLGATQEDVEHVLAVLQEFDPPG
VCARNLRECLAIQLRELDRYDPAMQALVEHLDLLAKRDIASLRKLCGVDDEDIADMIDEL
RRLSPKPGMKFGSARLQTMVPDVYVRPAPDGGWHVELNSDTLPRVLVNQTYYSKLSKKIG
KDVDKSYFNDALQNATWLVRALDQRARTILKVATEIVRQQDGFFTLGVAHLRPLNLKAVA
EAIQMHESTVSRVTANKYMATNRGTFELKYFFTASIPSADGGEAHSAEAVRHRIKQLIES
EEPSAVLSDDAIVERLRVSGIDIARRTVAKYREAMRIRSSVQRRRDNMWSTMNSRASGGT
GLDK
NT seq 1455 nt   +upstreamnt  +downstreamnt
atggcgctcacgcaaagattagagttccggcaatcccagtcgctggtcatgtcgccgcag
ctgatgcaggcgatcaagctgctgcaattatctaatctcgacctcatgaccttcgtggag
gaagagctggagtgtaatccgctgctcgagcgtgccagtgacgatgcagctggggccgaa
gccccgactgaggtcgatcaggtcagcggcgatcagctggccgaggcccaagtgcgcgac
gcccgggatggcgccatgaccacctataccgaatggggtggcggcggctcgggtgacgaa
gactacaatctcgaagcgtttgtcgcgtccgagacaacattgtccgaccacctggccgaa
caactgtcggtcgcattcaccgcgccggcgcagcgcatgatcgggcagtatctgatcgat
ctcgtcgacgaagccggctatctgccgccggatctcggccaggccgccgagcggctcggc
gcaacgcaggaggatgtcgagcacgttcttgccgtcctgcaggagttcgatccgcccggc
gtctgtgcgcgtaacttgcgcgagtgcctggcgatccagctccgcgagctcgatagatac
gatccggcgatgcaggccctcgtcgagcatctcgatctcctcgccaagcgcgacatcgcg
agcttgcgcaagctctgcggcgtcgacgacgaggacatcgccgacatgatcgacgagctc
cgccggctcagtcccaagccgggcatgaagttcgggtcggcgcggctgcagacgatggta
cccgacgtctatgtccgtccggctcctgatggcggctggcatgtcgagctcaacagcgac
accttgccgcgcgtgctggtcaaccagacctattattccaagctgtcgaagaagatcggc
aaggacgtcgataagtcctacttcaacgacgcgctgcagaacgcgacctggctggtgcgc
gcgctcgaccagcgcgcccgcaccatcctgaaagttgcgaccgagatcgtgcgtcagcag
gacggcttctttacccttggtgttgcgcatttgcggccgctgaatctaaaggccgttgcc
gaggccatccagatgcatgaatccacggtgtcgcgcgtcaccgccaacaaatacatggca
acaaatcgcggcacattcgagttgaaatatttcttcacggcatcgatcccttcggcggat
ggcggtgaggcgcattccgctgaagcggtgcgtcaccgcatcaagcagctgatcgaatcc
gaagagccgtcagcggttctgtccgatgacgcgatcgttgagcgcctgcgagtctcgggc
attgatattgcccgccgcacggtcgcgaagtaccgcgaagccatgcgcattcggtcctcg
gtgcagcgccgccgcgacaatatgtggtcaacgatgaacagtagagcatcgggcggaact
ggcctcgataaataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (4)   
   Pfam (4)   
All databases (20)   

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