KEGG   Bradyrhizobium diazoefficiens USDA 110: blr3042
Entry
blr3042           CDS       T00109                                 
Symbol
blr3042
Name
(GenBank) ORF_ID:blr3042; putative RNA polymerase sigma factor
  KO
K03088  RNA polymerase sigma-70 factor, ECF subfamily
Organism
bja  Bradyrhizobium diazoefficiens USDA 110
Brite
KEGG Orthology (KO) [BR:bja00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bja03021]
    blr3042 (blr3042)
Transcription machinery [BR:bja03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     blr3042 (blr3042)
SSDB
Motif
Pfam: Sigma70_r2 Sigma70_r4_2 Sigma70_r4 Sigma70_ECF DUF134 GerE HTH_Tnp_ISL3 DUF742 TrmB HTH_23 HTH_17 HTH_10 DUF1778
Other DBs
NCBI-ProteinID: BAC48307
UniProt: Q89QT2
Position
3359410..3359973
AA seq 187 aa
MTQAASDEILIARIAQGDRLAMQVLYGRHHVRVYRFGLRLVRDEQAAEDLISEVFLDVWR
QAGKFEGRSAVSTWLLAITRFKALSALRRRKDFELDEDAANAIEDTSDNPETVVQKKDTS
EALRECLTGLSPEHREIVDLVYYHEKSVEEVAEIVGIPENTVKTRLFYARKKLAELLKAA
GVERGWP
NT seq 564 nt   +upstreamnt  +downstreamnt
gtgacacaggcggcttcggacgagatcctcatcgccaggatcgctcagggtgaccggctt
gccatgcaggtgctgtacgggcggcaccatgtcagggtctacaggttcggcctcaggctc
gtacgggacgagcaggcggcggaagacctcatcagcgaggtgtttctcgacgtctggcgt
caagccggcaagttcgagggtcgatccgcagtttccacttggctgctggccattacccga
ttcaaggccctctcggcgctccggcgcaggaaggactttgagttggacgaagacgccgcg
aacgcgattgaggatacgtccgacaatccggaaacggtggtgcagaagaaggataccagt
gaagcgttgcgggagtgtctgacgggcctctcgccggaacaccgggaaatcgtcgatctc
gtctactaccacgagaagtccgtggaagaagtggccgaaatcgtcgggataccggagaac
actgtaaagacgcgcttgttctatgcgcgcaagaaactggccgaactgctgaaggcagcc
ggcgttgagcgaggctggccatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (10)   
   KEGG ORTHOLOGY (1)   
   RefGene (7)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (13)   
   Pfam (13)   
All databases (27)   

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