KEGG   Bradyrhizobium japonicum USDA 6: BJ6T_21860
Entry
BJ6T_21860        CDS       T01848                                 
Name
(GenBank) holliday junction DNA helicase
  KO
K03551  holliday junction DNA helicase RuvB [EC:5.6.2.4]
Organism
bju  Bradyrhizobium japonicum USDA 6
Pathway
bju03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:bju00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    BJ6T_21860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bju03400]
    BJ6T_21860
Enzymes [BR:bju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BJ6T_21860
DNA repair and recombination proteins [BR:bju03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    RecBC pathway proteins
     BJ6T_21860
    RecFOR pathway proteins
     BJ6T_21860
SSDB
Motif
Pfam: RuvB_N AAA_lid_4 RuvB_C AAA AAA_5 TIP49 Mg_chelatase AAA_22 AAA_3 nSTAND3 AAA_16 AAA_2 Rad17 AAA_14 AAA_18 AAA_17 NTPase_1 AAA_33 TsaE RNA_helicase AAA_28 DUF815 NB-ARC MCM NACHT AAA_24 AAA_7 IstB_IS21 ABC_tran Sigma54_activ_2 Parvo_NS1 AAA_PrkA
Other DBs
NCBI-ProteinID: BAL07465
Position
complement(2253942..2255000)
AA seq 352 aa
MSDPKANRMVSPERRSDDVGDTALRPQSLSDFVGQQQARKNLSIFIEAARKRGEALDHVL
FVGPPGLGKTTLAQIVAKELGVGFRATSGPVIAKAGDLAALLTNLEERDVLFIDEIHRLS
PAVEEVLYPAMEDFQLDLIIGEGPAARSVKIELSKFTLVGATTRAGLLTNPLRDRFGIPV
RLNFYTIEELESIVTRGARVLNVGMSADGANEIARRARGTPRIAGRLLRRVRDFASAADA
ASIDRKIADHALSALEVDAAGLDAMDRRYLTTIAQNYGGGPVGVETMAAALSEPRDAIED
IIEPYLIQCGYLQRTPRGRLLTSHAFRHLGIAEPSRDAAAQFGLFGTDESDD
NT seq 1059 nt   +upstreamnt  +downstreamnt
gtgagcgaccccaaggccaaccgcatggtctcgcccgagcgccgcagcgacgatgtcggc
gacaccgcgctgcgtccgcaatcgctgtccgacttcgtcggccagcagcaggcgcgcaag
aacctctcgatcttcatcgaggcggcacgcaagcgcggcgaggcgctcgatcacgtgctg
ttcgtaggcccccccggcctcggcaagaccacgctggcgcagatcgtcgccaaggagctc
ggcgtcggctttcgcgccacctcgggtccggtgatcgcgaaggctggcgatctcgccgca
ctcctcaccaacctcgaagagcgcgacgtgctcttcatcgacgagatccatcgcctgagc
ccggcggtggaagaggtgctctatcccgcgatggaggactttcaactcgacctgatcatc
ggcgagggcccggcggcacgctcggtgaagatcgagctgtcgaaattcacgctcgtcggc
gccaccacacgcgctggcctgctcaccaatcccttgcgcgatcgcttcggcatcccggtc
cggctcaacttctatacgatcgaagagctggaaagcatcgtcacccgcggcgcgcgcgtg
ctcaatgtcggtatgagcgccgacggtgccaacgagatcgcgcgccgcgcccgtggcacg
ccgcgcatcgccggccgcctgctgcgccgcgtgcgcgatttcgcctccgccgccgatgcc
gcctcgatcgaccgcaagatcgccgaccacgcgctgagcgcgctcgaggtcgacgccgcc
ggcctcgatgccatggaccgccgctacctcacgaccatcgcgcagaactatggcggcggc
ccggtcggcgtcgagacgatggctgccgctttgtccgagccgcgcgatgcgatcgaggac
atcatcgagccttatctcattcagtgcggctatctccagcgcaccccgcgcggccgcctg
ctcacctcgcacgccttccgccatctcggcatcgccgagccctcgcgcgatgccgcggca
cagttcggcctgttcggcacggacgagagcgacgactga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (32)   
   Pfam (32)   
All databases (41)   

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