KEGG   Bradyrhizobium japonicum USDA 6: BJ6T_46050
Entry
BJ6T_46050        CDS       T01848                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
bju  Bradyrhizobium japonicum USDA 6
Brite
KEGG Orthology (KO) [BR:bju00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bju03032]
    BJ6T_46050
   03400 DNA repair and recombination proteins [BR:bju03400]
    BJ6T_46050
Enzymes [BR:bju01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BJ6T_46050
DNA replication proteins [BR:bju03032]
 Prokaryotic type
  DNA Topoisomerases
   BJ6T_46050
DNA repair and recombination proteins [BR:bju03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BJ6T_46050
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim zf-C4_Topoisom Toprim_4 Milton
Other DBs
NCBI-ProteinID: BAL09872
Position
complement(4682068..4684815)
AA seq 915 aa
MNIVIVESPAKAKTINKYLGSSYEVLASFGHVRDLPAKNGSVDPDANFKMIWEVDPKAAG
RLNDIAKSLKGADRLILATDPDREGEAISWHVLEVLKEKRALKDQKIERVVFNAITKQAV
TDAMKNPRQIDGALVDAYMARRALDYLVGFTLSPVLWRKLPGARSAGRVQSVALRLVCDR
ELEIEKFVPREYWSLIATLLTPRGDAFEARLVGADGKKIQRLDVGSGAEAEDFKKALEAA
AYAVTAVDAKPARRNPQAPFTTSTLQQEASRKYGFAPAHTMRIAQRLYEGIDIGGETTGL
ITYMRTDGVQIDPSAITQARKVIGEDYGNAYVPEAPRQYQAKAKNAQEAHEAIRPTDMSR
RPDSMSRKLDADQARLYELIWKRTIASQMESAELERTTVDITAKAGSRTLELRATGQVVK
FDGFLALYQEGRDDEEDEDSRRLPAMSPNDALKRQSLAVTQHFTEPPPRFSEASLVKRME
ELGIGRPSTYASILQVLKDRGYVKLEKKRLHGEDKGRVVVAFLESFFNRYVEYDFTANLE
EQLDRISNNEISWQQVLKDFWTGFIGAVDEIKDLRVAQVLDVLDDMLGQHIYPPRADGGD
IRQCPSCGNGRLNLKAGKFGAFVGCSNYPECRYTRQLAADSETTADRSLGQDPDTGRDVW
VKAGRFGPYIQLGEPKDYEEGEKPKRAGIPKGTSPGDVELELALKLLSLPREIGKHPETG
QPITAGLGRFGPFVKHEKTYASLESGDEVFDIGLNRAVTLIAEKVAKGPSRRFGADPGKA
IGDHPTLGTVTVKSGRYGAYVTAGGVNATIPAEFEKDTVTLPQAIALIDERAAKGGGKTK
AKKAAKPAKAKKAAEKAADGDDAAPKPKKPAAKKAAKPKSESTSKARAAVSSTAKTSPTK
AAAPKAPAKKSAGKT
NT seq 2748 nt   +upstreamnt  +downstreamnt
atgaatatcgtcattgtggagtcgccggcgaaagccaagacgatcaacaagtatctgggc
tcgtcctacgaggttctggcctcgttcggccatgtccgcgacctcccggcgaagaacggt
tccgtcgatccggacgcaaatttcaagatgatctgggaggtcgaccccaaggcggccggc
cggctcaacgatatcgccaagtccctgaagggcgccgaccgcctgattctggcgaccgac
cctgatcgcgagggcgaggccatctcctggcacgtgctggaggtgctgaaggaaaagcgc
gcgctgaaggatcagaagatcgagcgcgtggtgttcaacgccatcaccaagcaggcggtc
acggatgcgatgaagaatccgcgccagatcgacggcgcgctggtcgacgcctacatggcg
cgccgggcgctggactatctggtgggcttcaccctctcccccgtgctctggcgcaagctg
ccgggcgcccgctcggccggccgcgtgcagtcggtggcactgcggctggtctgcgaccgc
gagctcgaaatcgagaagttcgtgccgcgcgaatactggtcgctgatcgcgacgctgctg
acgccgcgcggcgacgccttcgaggcgcgcctcgtcggcgccgacggcaagaagatccag
cgcctcgacgtcggcagcggcgcggaagccgaagacttcaagaaggcgctggaagcagcc
gcctatgccgtgaccgcggtcgatgcgaagccggcccggcgcaatccgcaggcccctttc
accacctcgacgctgcagcaggaagccagccgcaaatacggttttgcgccagcacacacg
atgcgcatcgcgcagcgcctttatgaaggcatcgacatcggcggcgagaccaccggactc
attacttatatgcgtaccgacggcgtgcagatcgatccgtccgcgatcacccaggcgcgc
aaggtgatcggcgaggattacggcaacgcctatgtgccggaggccccgcgccagtatcag
gccaaggccaagaatgcccaggaagcgcacgaagcgatccgtccgaccgacatgtcgcgc
cgccccgacagcatgagccgcaagctcgacgccgaccaggcgcgactctatgagctgatc
tggaagcgcaccatcgcgagccagatggaatcggccgagctcgagcgcaccaccgtcgac
atcaccgcgaaggcaggctcccgaacgctggagctgcgtgcgacgggtcaggtcgtcaag
ttcgacggcttcctcgcgctctaccaggaaggccgcgacgacgaggaagacgaggattcg
cgccgtctgcccgcgatgagcccgaacgacgcgctcaagcggcagtcactcgccgtcacc
cagcacttcaccgagccgccgccgcgcttctcggaggcctcgctggtcaagcgcatggaa
gagctcggcatcggccgtccctcgacctatgcctcgatcctccaggtcctgaaggaccgc
ggctacgtcaagctggagaagaagcgccttcacggcgaggacaagggccgcgtcgtggtc
gccttcctcgaaagcttcttcaaccgctacgtcgaatacgacttcaccgccaatctggag
gagcagctcgaccgcatctccaacaacgagatctcctggcagcaggtgctgaaggacttc
tggaccggcttcatcggcgccgtcgacgagatcaaggatctgcgcgtagcccaggtgctc
gacgtgctcgacgacatgctgggccagcacatctatccgccccgcgccgatggcggcgat
atcaggcagtgcccgagctgcggcaacggccggctcaatctcaaggccggcaagttcggc
gccttcgtcggctgctcgaactatccggaatgccgctacacccgccagctcgccgccgac
agcgagaccaccgccgaccgttcgctcggccaggatcccgacaccggtcgcgatgtctgg
gtcaaggccggccgctttgggccctacatccagctcggcgagcccaaggattacgaggaa
ggcgagaagccgaagcgcgcgggcatcccgaagggcacctcgcccggcgatgtcgagctc
gagcttgcgctgaagctgttgtcgctgccgcgcgagatcggcaagcatccggagaccggt
cagccgatcacggcaggactcggccgtttcgggccgttcgtgaagcacgagaagacctac
gccagcctggagagcggcgacgaggtcttcgatatcggcctcaaccgcgcggtgacactg
atcgcggaaaaggtcgccaagggcccgagccgtcgcttcggcgccgaccccggcaaggcg
atcggcgatcatccgaccctcggcaccgtcacggtgaagagcggccgttacggcgcctat
gtcacggcaggcggcgtcaacgcgacgatcccggccgagttcgaaaaggacaccgtcacg
ctgccgcaggcgatcgcgctgatcgacgagcgcgcggccaagggcggcggcaagaccaag
gcgaagaaagccgcgaagccggccaaggccaagaaggctgcggagaaggccgcggacggc
gatgacgccgcgccgaagccgaagaaaccggccgcgaagaaggcggccaaacccaaatcc
gaatccaccagcaaggcgcgcgccgccgtgtcgtcgaccgcaaaaacgtcgccgaccaag
gccgccgcccccaaggctccggccaagaagagtgccggcaagacctag

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Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (15)   

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