KEGG   Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854: BBKW_0258
Entry
BBKW_0258         CDS       T04223                                 
Name
(GenBank) ribonuclease G
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
bks  Bifidobacterium catenulatum subsp. kashiwanohense JCM 15439 = DSM 21854
Pathway
bks03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bks00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BBKW_0258
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bks03019]
    BBKW_0258
   03009 Ribosome biogenesis [BR:bks03009]
    BBKW_0258
Enzymes [BR:bks01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BBKW_0258
Messenger RNA biogenesis [BR:bks03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BBKW_0258
Ribosome biogenesis [BR:bks03009]
 Prokaryotic type
  rRNA processing factors
   BBKW_0258
SSDB
Motif
Pfam: RNase_E_G DnaJ_CXXCXGXG
Other DBs
NCBI-ProteinID: BAQ28393
Position
325101..327929
AA seq 942 aa
MPNTNEGFDQVEAVASPEHAVNVVKFESAQSDSAPRRRRGGRRVVRGVGAAGASLELKVE
EHAATPLFEEPKLPVAQPAHDAGDVAASSDDGDSDGVSRPTRRRRRSARPDDDVREIADE
QSTRTRRRRAVQVEDERDEDRLRRRRRSVEDADEYDEMPRRRRRSAVDDSRDEESFEERA
LDAVDMLPEGHEVRHNPRPMMSLLFQEPVLPSAADSRDRSDDDRDDSRESRNDRNMQDHD
DAQGEDRPTRRRRRRNRDVADEERSEDNRSERNERDNRNDDAENDEEGGSRKSRRSRRLN
AQERRAAAEVEQIEEDLILDDITYAPIDEETRGNRGDDDDDEQPTRTRRRRRGHGSREEA
DERQQENVEGESRRRREEDDEEEGTVTRRRRRRRGGAKAEEQEEMLVRRSRKQQYIDEIT
DVEGSTRLEAKKQRRRDNRRERSRQSQLMEQDFLARREHVDRLMVVRERERHTQISVIED
NVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEVNWDSARLE
GQPRRIELAFKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSE
RERSRLKNIVSKVAPKDMGVIIRTAAEGASEEAITKDLESLVRQWERITDKRDEFLHGKR
PKLLQGEPDVAIRVVRDIFNDDFSKMIVEGDRVYGRIEEYLDTMAPDLKDKLEKWDPAEH
EGKDVFDKWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRFIGRGKSLEETV
TRCNLEASEEIARQLRLRDIGGMVMIDFVDMVMPANRDLVLRRLVECLARDRTKHQVAEV
TSLGLVQMTRKRIGQGLVEAFSEECPTCKGRGFILHDEPTVSADYDDPYALKGGDPFVKT
NKHGHGTDVQVPKGSSPDVKAKLAQIAAAAVAANNAELGEEA
NT seq 2829 nt   +upstreamnt  +downstreamnt
gtgcctaataccaatgagggcttcgatcaggtcgaagccgtggcatcacctgagcatgcc
gtgaatgttgtgaaattcgaatcggcccagtccgattctgcgccgcgtcgccgtcgtggc
ggtcgtcgtgtggtgcgtggggttggagccgctggtgcgtctttggagttgaaggtcgag
gagcatgccgcgaccccgctatttgaagagccgaagttaccggttgcgcagcctgcacat
gatgccggtgacgtcgctgcttccagtgatgatggtgattccgatggcgtgtctcgcccg
actcgtcgccgtcgtcgttcggcccggcccgacgatgatgttcgtgagattgccgatgag
cagtcgacgcgtactcgtcgccgccgcgcggtgcaggtcgaggatgagcgggatgaggat
cgcctgcgtcgccgtcgtcgttccgttgaagatgcggatgagtatgacgagatgccgcgt
cgtcgccgtcgcagtgccgtcgatgattcccgcgatgaggaatcgttcgaagaacgcgcg
cttgatgcggttgatatgttgccggaaggccatgaggtccgtcataatccgcgtccgatg
atgtcgctgctgttccaggagccggttttgccgtctgctgcggattcccgtgacaggtcc
gatgacgatcgtgacgattcccgtgaatctcgcaatgatcgcaatatgcaggatcatgac
gatgcgcagggtgaggatcgtccgacccgtcgccgtcgccgtcgtaatcgtgacgttgct
gacgaagagcgttccgaagacaatcgcagtgaacgtaacgagcgtgacaatcgtaatgat
gatgcggaaaacgatgaggaaggcggatctcgcaagtcccgtcgttcccgtcgtttgaac
gcgcaggagcgtcgagctgcggccgaggtcgagcagattgaagaggatttgatcctcgac
gatatcacgtacgcgcctatcgacgaggaaacacgtggcaatcgtggtgacgatgatgat
gacgagcagccgacgcgcacccgtcgtcgccgtcgtggccatggcagtcgtgaggaagct
gacgaacgacagcaggagaacgtcgaaggtgagtctcgccgccgccgtgaggaggatgac
gaggaagagggcacggtgacccgtcgtcgtcgccgccgccgtggcggcgcgaaggccgag
gagcaggaagagatgctcgtacgccgttcccgcaagcagcagtacattgacgagatcacc
gatgtcgagggttcgactcgacttgaggccaagaagcagcgccgccgtgacaatcgccgc
gaacgcagccgtcaaagccagctcatggaacaggatttcctggctcgccgcgagcatgtg
gatcgcctgatggtggtgcgcgagcgcgaacgccacacgcagatttccgtgatcgaagac
aatgtgcttgtcgagcattacgtgtccgacattcaggaagtcgccaccgtgggcaacatc
tatcttggtcgcgtgcagaacgtgctgccgagcatggaggccgcgttcgtagacatcggc
caggcgcgcaacggcgtgctgtatgcgggtgaggtgaactgggattccgcacgtttggaa
ggccagcctcgccgcatcgaactcgcgttcaaatcgggagacccagtgctcgtgcaggtc
actaaggatccgatcgggcacaagggcgcacgactgacctcgcaggtcacccttgcgggc
cgtttcctggtgctcgtgccatccggtggcatgacgggcgtgagtcgcaagctcagcgag
cgcgaacgttcccgcctcaagaacatcgtgtcgaaggttgctccgaaagacatgggcgtg
atcattcgtaccgctgcggaaggcgcttccgaagaggcgatcaccaaggatctcgaaagc
ttggtgcgccagtgggaacgcatcaccgacaagcgtgacgaattcctgcacggcaagcgt
ccgaagctgctgcaaggcgagccggacgtggcgatccgcgtggtgcgagacatcttcaac
gacgacttctccaagatgatcgttgaaggtgaccgcgtgtacggccgtatcgaggaatac
ctcgacactatggctcccgacttaaaagacaagcttgaaaagtgggatccggccgaacat
gaaggcaaagacgtgttcgacaagtggcagatcgactcccagctgcgcaagggcatggaa
cgtcaggtctacctgccgtcgggcggctcgatcgtgatcgaccgcaccgaagccatgacc
accatcgacgtgaacaccggccgtttcatcggccgcggcaagagccttgaggagacggtg
acccgctgcaacctcgaagcttccgaagagatcgcacgtcagctgcgcctgcgtgacatc
ggcggcatggtgatgattgacttcgtcgacatggtcatgccagccaaccgtgatctggtg
ctgcgcagactggtggaatgcctggctcgtgaccgtaccaagcatcaggtggctgaagtc
acctcgcttggcctggtgcagatgacgcgaaagcgcatcggacagggcttggtggaggcc
ttctccgaggaatgcccgacctgcaagggccgtggattcattcttcacgacgagccgacc
gtgtccgcggattatgacgatccgtacgccttgaagggcggcgacccgttcgtcaaaacc
aacaagcatggtcacggcacggacgtgcaggtgccgaaaggctcctcgccggacgtgaag
gccaaactcgcgcagatcgcggcggctgccgtggctgccaataatgcggaactgggcgag
gaagcatag

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (12)   

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