KEGG   Burkholderia latens: WK25_16550
Entry
WK25_16550        CDS       T04819                                 
Name
(GenBank) DNA ligase
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
blat  Burkholderia latens
Pathway
blat03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:blat00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    WK25_16550
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:blat03400]
    WK25_16550
Enzymes [BR:blat01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     WK25_16550
DNA repair and recombination proteins [BR:blat03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     WK25_16550
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S Menin
Other DBs
NCBI-ProteinID: AOK06153
UniProt: A0A1B4NWW3
Position
3:complement(207781..210654)
AA seq 957 aa
MAGKLDPYRRKRHFDATPEPEGAHGRRRTKAAAKPDARAAARKPRPLRFVIQEHHARRLH
YDFRLELDGTLKSWAVPKGPSFDPAVKRLAVHVEDHPLEYASFEGEIPAGHYGAGSVVVW
DEGTWTPDGGLAHAREGYRAGKLTFRLDGHKLHGGWALVRSGRQEGRQEQWLLIKERDDD
ARSADEFDVVGERPGSVHDGGVSAASAGADGSEKRTRGSPRGRNGKAGTDGTDGKSDAAP
ARKRGTRAGRREEGRDRDAGADGKRPAGPSAVDGAVRAPLPERVAPQLATLVDAPPTQDG
WCYELKFDGYRMLARISGKGTRRRVTLMTREGRDWTAKLGAQRDALAALDVDEAWLDGEA
VVLGPNGLPSFQALQNALGAGRSDEITLFVFDLPYLDGYDLRDAPLTSRRALLEPLLADS
DPARLRFSPDLGEDVASLIASACDTGLEGLIGKRADSRYRAGRSPAWIKLKCRRRQEFVI
GGYTEPSGSRSGFGALLLGVHEPSGSGKRSRGPGPLRYVGRVGTGFDTRMLDKLAAILRK
HERATTPFDPPPRERSRTPVHWIEPTLVAECEFAEWTGDGIVRQAAFIALREDKPASQIV
REVPRHTETAEQEVAMDQRETTDDGKRKPASRAARDADDSKPNARTRTPSRAATGAEEVG
GPTQLGRVRITHPDRVIDPHSGTRKIDLARYWQWVAPWLLRDLKGRPVSLVRAPGDITGE
LFFQKHAERREIPFVTQHEGLDPGHGPLLSLDSVDALLGAAQMGTIELHTWNAHASNIER
PDRIVFDLDPDPALPWSTMIEAAQLVRGLLDELGLVSFCKTSGGKGLHVVVPITRHMGWD
DVKDFSRAVAQHVAGALPDRFTATMGPRHRRGKIFIDYLRNGRGASTIAAYSVRARPGMG
VSVPLRWDEVSDTTGGDQWTIDTLHERVDRLKRDPWEGYDDTRQRITAQMRARLGRS
NT seq 2874 nt   +upstreamnt  +downstreamnt
atggccggcaagctcgatccgtatcgccgcaaacgccacttcgacgcgacgccggagccc
gagggcgcgcacgggcgtcgccgcacgaaagcggccgcgaagccagacgcgcgagccgct
gcgcgcaagcctcgcccgctgcgcttcgtgatccaggaacaccacgcgcggcggctgcat
tatgacttccggctcgaactcgacggcacgctgaagtcgtgggccgtgccgaaagggccg
agcttcgatccggccgtgaagcgtctggcggtgcacgtcgaagaccatccgctcgaatac
gcatcgttcgaaggcgagattcccgccggacattacggcgccggctcggtcgtcgtgtgg
gacgaaggcacgtggacgcccgacggcggcctcgcgcatgcgcgcgaagggtatcgcgcg
ggcaagcttacgttccggctcgacggccacaagctgcacggcggctgggcgctcgtgcgc
agcggccggcaggaagggcggcaggagcagtggctgctgatcaaggagcgcgacgacgac
gcgcgcagcgcggacgaattcgacgttgtcggcgagcgcccaggcagcgtgcacgacggt
ggggtgtccgcggcgagtgcaggcgccgatggcagcgagaagcgcacgcgcggctcgccg
cgcggccggaacggcaaggcgggcacggacggcacggacggcaagtccgacgccgccccc
gcgcgaaagcgcggtacgcgcgccggtcggcgcgaagagggccgcgatcgcgacgccggc
gccgacgggaaacggcccgccgggccgtccgcggtcgacggcgcggtgcgtgcgccgctg
ccggagcgcgtcgcgccgcaactcgcgacgctggtcgatgcaccgccgacgcaggacggc
tggtgctacgaactgaagttcgacggttaccggatgctggcgcgcatttcggggaagggc
acgcggcggcgcgtgacgctgatgacgcgcgagggccgcgactggaccgcgaagctgggc
gcgcagcgcgacgcgctcgcggcgctcgacgtcgacgaagcatggctcgacggcgaggct
gtcgtgctcggtccgaacggcctgcccagcttccaggcgctgcagaatgcgctcggcgca
ggacgctcggacgagatcacgctgttcgtattcgatctgccctatctcgacggttacgac
ttgcgcgacgcgccgctcacctcgcgccgcgcattgctcgaaccgttgctcgccgacagc
gacccggcgcggctgcgtttctcgcccgatctcggcgaagacgtcgcgtcactcatcgcg
agcgcgtgcgacacgggcctcgaaggcctgatcggcaagcgcgcggactcgcgctatcgc
gccggccgttcgcccgcatggatcaagctcaaatgccggcgcaggcaggagttcgtgatc
ggcggctacaccgagccgtcgggcagccgcagcggcttcggcgcgttgctgctcggcgtg
cacgaaccgtcgggcagcggcaagcgctcgcgcgggcccgggccgctgcgctacgtcggc
cgggtcggcacgggcttcgatacgcggatgctcgacaagctcgcggcgatcctgcgcaag
cacgagcgcgcgacgacgccgttcgatccgccgccgcgcgagcgctcgcgcacgccggtg
cactggatcgagccgacgctcgtcgccgaatgcgaattcgccgaatggaccggtgacggc
atcgtgcggcaggccgcgttcatcgcgctgcgcgaagacaagccggcgtcgcaaatcgtg
cgcgaagtgccgaggcatacggaaaccgcggaacaggaggtagcgatggatcagcgtgag
accacggatgacggcaagcgcaagcccgcatcgcgcgcggcgcgcgacgcggacgatagc
aagcccaacgcacggacgcgcacgccctcgcgcgccgcgaccggcgcggaggaggtcggc
ggtcccacccagctcggccgcgtgcgcatcacccatcccgatcgtgtgatcgacccgcac
agcggcacgcgcaagatcgatctcgcgcgttactggcagtgggtcgcgccgtggctgctg
cgcgatctgaagggccgcccggtgtcgctggtgcgcgcgccgggcgacatcaccggcgaa
ctgttcttccagaagcacgcggagcgccgcgagattccgttcgtcacgcaacacgaaggg
ctcgaccccgggcatggtccgctgctgtcgctcgacagtgtcgacgcgctgctcggcgcc
gcgcagatgggcacgatcgaactgcacacgtggaacgcgcatgcgtcgaacatcgagcgg
ccggaccggatcgtgttcgatctcgatccggatccggcgctgccgtggagcacgatgatc
gaggccgcgcagctcgtgcgcgggttgctcgacgagctggggctcgtatcgttctgcaag
acgagcggcggcaaggggctgcacgtcgtcgtgccgatcacgcggcacatggggtgggac
gacgtgaaggacttctcgcgcgcggtcgcgcagcacgtggccggtgcactgcccgaccgt
ttcactgcgacgatggggccgcgtcaccggcgcggcaagatcttcatcgactacctgcgc
aacggccgcggcgcgagcacgatcgccgcgtactcggtgcgcgcgcggcccggaatgggc
gtgtccgtgccgctgcgctgggacgaggtgtccgacacgaccggcggcgaccaatggacg
atcgacacgctgcacgaacgcgtcgaccggttgaagcgcgacccgtgggaaggctacgac
gacacgcgccagcggatcaccgcgcaaatgcgcgcgcggctgggccgctcgtga

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (22)   

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