KEGG   Bifidobacterium longum subsp. longum BBMN68: BBMN68_173
Entry
BBMN68_173        CDS       T01345                                 
Symbol
dnaE
Name
(GenBank) DnaE
  KO
K02337  DNA polymerase III subunit alpha [EC:2.7.7.7]
Organism
blb  Bifidobacterium longum subsp. longum BBMN68
Pathway
blb03030  DNA replication
blb03430  Mismatch repair
blb03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:blb00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    BBMN68_173 (dnaE)
   03430 Mismatch repair
    BBMN68_173 (dnaE)
   03440 Homologous recombination
    BBMN68_173 (dnaE)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:blb03032]
    BBMN68_173 (dnaE)
   03400 DNA repair and recombination proteins [BR:blb03400]
    BBMN68_173 (dnaE)
Enzymes [BR:blb01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     BBMN68_173 (dnaE)
DNA replication proteins [BR:blb03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     BBMN68_173 (dnaE)
DNA repair and recombination proteins [BR:blb03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     BBMN68_173 (dnaE)
SSDB
Motif
Pfam: DNA_pol3_alpha DNA_pol3_finger PHP HHH_6 tRNA_anti-codon tRNA_anti_2 DUF655 DUF5487
Other DBs
NCBI-ProteinID: ADQ02608
Position
196067..199624
AA seq 1185 aa
MADYGKNFVQLHNHTHYSLLDGASKIPDLAKRAAELGMPAVGITDHGNMHGAYEMYTNCV
ANGVKPIIGIEAYVTPETARQDKSRVHWGTEAQRRDDVSGGGLITHLTMWAENDEGLVNL
IKASSVANLEGRVMRYPRMDKEVLATYSKGVIASSGCPSGIIQTRLRLGQFDEALRAAGE
FQDIFGKDNFFIELMDHGLPIETQVTGDLLTIAKKLNAPLLATNDSHYVHAEDAQAQDAM
LCINSGSRLDDPDRFKFDGTGYYIKTAEEMRELFKDHPDACDNTLAIAERCNVMFDDHED
GAFMPKFPCPEGWDETSLFLKKVEEGLEKRYDGNPPLDVLKQADYECGVICQMQFCGYFL
VVADYIQWAKDHGIMVGPGRGSAAGAMVAYSMGITELDPLKHGLIFERFLNPERVSLPDI
DVDFDPEGRARVIEYCGEKYGTDKVAQCVIYGTIKTKQALKDSARIMGYEFSVGEKVTKA
LPPAATGGKDISLHDIFDPTAKRYAEAREFRELYDSDPDAKRITEEAKGIEGLIRQTGVH
ACATIMGSAPITDTSPLLERTDGTITTTFEYHTCETLGLVKMDFLGLSNLTIIHDTLKNI
EANGKPAIDYTKIPLDDAETYKLMSRGDTLGVFQLDSDGMRSLLKTLKPDNFNDISALIA
LYRPGPMSMDSHTNYAKRKNGLQKITPIHPELEEPLKQVLDETYGLIIYQEQVQSAARIL
AGYSLGKADVLRRAMGKKKPEVLAKEKVPFFAGMKEHGYSEEASQAVWDILVPFSGYAFN
KAHSAAYGLISYWTAYLKTHYPVEFMAALLQGAATNKDKTALYLGEARRMGIQVLSPDVN
ESVYEYSAVGDVVRFGLGAIRNVGDKAVADIIAEREGPRGKFVNFMDFIRRVPLTALNRR
LVESLIKAGAFDSIDPNRRALFTVHEAAIDSVVSLKRKQAEGQFDLFSDAEDGGAEAMGD
ASVTVPDLEEWDKKTKLNFEREMLGLYVSDHPLSGMQSILASLREMSIAHLVDRAKTMGE
GQQVTLAGLVTNVDRRVSKKGNPWAIVTIEDMESSIQCMFFGKVYEAAAAELAVDAIVQI
RGQVELRDETVSLRATEMQIPTLEAEDERPLVITLPSVALERQRMMQLGQVLANHPGYCE
VHLAVLDEKGNAQVLTFGDRFRVKRDTSLFAEIKILFGPSCLPAA
NT seq 3558 nt   +upstreamnt  +downstreamnt
atggctgattacggaaagaacttcgtgcaactgcacaatcacacgcactattcgctgctc
gatggtgcgtcgaagattcctgatttggctaagcgtgcggccgaacttggcatgcctgcg
gtcggcatcaccgaccatggcaacatgcatggcgcctacgagatgtacaccaactgcgtg
gccaatggcgtcaagcccatcatcggcatcgaagcttatgtgaccccggaaaccgcacgt
caagacaagtcccgcgtgcattggggtaccgaagcccagcgccgcgacgacgtctccggt
ggtggtcttatcacccacttgaccatgtgggccgaaaacgacgaaggcctggtcaacctc
atcaaagcctcgtccgtggccaacctcgaaggtcgcgtcatgcgttatccgcgtatggat
aaggaggtgctcgccacctattccaaaggcgtgatcgcatcctccggctgcccctcgggc
atcatccagacccgtctgcgcctcggtcaattcgatgaggccctgcgcgccgccggcgaa
ttccaggacatcttcggcaaagacaacttcttcatcgaactcatggatcacggtctgccc
atcgagactcaggtgaccggtgacctgctgaccatagccaagaaactcaacgcaccactg
ctggccactaacgattcccactacgtacacgccgaagatgcccaggcacaggacgccatg
ctctgcatcaactccggttcccgtcttgacgatccggaccgattcaagttcgacggcacc
ggctactacatcaaaaccgccgaagagatgcgcgaactgttcaaggaccatccggacgcc
tgcgacaacaccctcgccatcgccgaacgctgcaacgtgatgttcgacgaccatgaagac
ggcgcattcatgccgaaattcccctgccccgaaggctgggatgagacctccctgttcctc
aaaaaagtcgaggaaggtctggagaagcgctacgacggcaacccgccgctcgacgtattg
aagcaggccgactacgaatgcggtgtgatctgccagatgcagttctgcggatacttcctc
gtggtcgccgactacattcagtgggccaaggaccacggcattatggtgggtccgggccgt
ggctcggccgcaggcgccatggtcgcctattccatgggcattaccgagctcgatccgctc
aagcatggcctgattttcgagaggttcctgaaccctgagcgagtgagccttcctgatatc
gatgtcgacttcgaccctgaaggtcgtgcgcgagtcatcgaatactgcggcgaaaaatac
ggcaccgataaggtcgcccagtgcgtgatctatggcaccatcaaaaccaagcaggccttg
aaggactccgcccgcatcatgggctacgagttctcggtcggtgaaaaagtcaccaaggcg
ctgcctcccgcggccaccggcggcaaagacatcagcctgcatgacatcttcgacccgaca
gccaaacgctacgccgaggccagggaattccgagaactctacgattccgacccggacgcc
aagcgcatcaccgaagaagccaagggtatcgaaggcctgatccgacagaccggtgtacat
gcctgcgccaccatcatgggtagcgcgcccatcaccgacacctcgccgttgctggaacgc
accgatggcaccatcaccaccaccttcgaataccacacgtgcgaaacgttggggctggtc
aagatggacttccttggcctgtccaacttgacgatcatccacgacaccctgaagaacatc
gaggccaacggcaaacccgccatcgactacaccaagattccgctcgatgacgccgaaacc
tacaaactcatgtcccgaggagacacgctcggcgtgttccagctcgattccgacggcatg
cgttcactgctgaaaaccctgaagcccgataacttcaacgatatttccgcacttatcgcc
ctgtaccgaccgggcccgatgagtatggattcgcacaccaactacgccaagcgcaagaac
ggcctgcagaagatcacgccaatccaccctgagcttgaggaacctctgaaacaggtgctt
gacgagacctatggtctgatcatctaccaggagcaggtgcagtccgccgcccgaatcctc
gccggctattcgctgggcaaggcagacgtgctgcgtcgagccatgggtaagaagaagccc
gaagtgctggccaaggagaaggtgccgttcttcgccggtatgaaggagcatggatactcc
gaagaggcctcccaggccgtgtgggatattctggtgccgttctccggctacgctttcaac
aaagcgcactccgccgcatacggtctgatctcctactggaccgcatatctgaagacgcac
tacccggtcgaattcatggccgccctgttgcaaggtgccgccaccaacaaagacaagacc
gcactgtacttgggcgaggcccgccgcatgggcatccaggtgctctcgccggacgtcaac
gaatcggtgtacgagtactcggcagtcggcgacgtcgtccgattcggtcttggtgccatc
cgtaacgtgggtgacaaggccgtggccgatatcatcgccgaacgcgaaggcccgcgcggc
aagttcgtgaacttcatggacttcatccgccgcgtgcccctgaccgcgctgaaccggcga
ttggtcgaatcgttgatcaaggccggtgccttcgactcgattgacccgaaccgtcgcgcg
ctgttcaccgtgcacgaggccgccatcgactcggtggtgagtctgaagcgcaaacaggcg
gagggccagttcgatttgttctccgatgccgaggatgggggagcggaggccatgggcgac
gcttccgtgaccgtacccgatcttgaggaatgggacaagaagaccaagcttaacttcgaa
cgcgaaatgttgggcctgtatgtgtctgaccatccactctccggtatgcagtcgattctc
gcgtccttgcgtgaaatgtccatcgcgcatctggttgatcgagcaaaaacgatgggcgaa
ggccagcaggtcacgttggctggtttggtcaccaatgtggaccggcgcgtatccaagaag
ggcaacccctgggccatcgtgaccatcgaagacatggaaagctccatccaatgcatgttc
ttcggcaaggtctatgaagcggccgccgccgaacttgccgtggacgccatcgtacagatt
cgtggtcaagtggagttgcgcgacgaaaccgtttctctgagagccacggaaatgcagatt
ccgaccttggaagccgaggatgaacggccgttggtcatcacgctgccgtcggtggcgttg
gagcgccaacgtatgatgcaactcggccaggtgctcgctaatcatcctggttactgcgaa
gtacatcttgcggtgctggatgagaagggtaacgctcaggtgctcacgtttggcgatcgt
ttccgcgtcaagcgagatacttcgttgtttgctgagatcaagattctgtttggccccagc
tgcttgcctgccgcctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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