KEGG   Bacillus paralicheniformis: BaLi_c01260
Entry
BaLi_c01260       CDS       T02694                                 
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase RpoB
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
blh  Bacillus paralicheniformis
Pathway
blh03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:blh00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BaLi_c01260 (rpoB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:blh03021]
    BaLi_c01260 (rpoB)
   03400 DNA repair and recombination proteins [BR:blh03400]
    BaLi_c01260 (rpoB)
Enzymes [BR:blh01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BaLi_c01260 (rpoB)
Transcription machinery [BR:blh03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BaLi_c01260 (rpoB)
DNA repair and recombination proteins [BR:blh03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BaLi_c01260 (rpoB)
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_3 RNA_pol_Rpb2_7 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1
Other DBs
NCBI-ProteinID: AGN34554
Position
120317..123898
AA seq 1193 aa
MTGQLVQYGRHRQRRSYARISEVLELPNLIEIQTSSYQWFLDEGLREMFQDISPIEDFTG
NLSLEFIDYSLGEPKYPVEESKERDVTYSAPLRVKVRLINKETGEVKDQDVFMGDFPIMT
DTGTFIINGAERVIVSQLVRSPSVYFSGKVDKNGKKGFTATVIPNRGAWLEYETDAKDVV
YVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGENEYLRNTLDKDNTENTDKALLEIYERL
RPGEPPTVENAKSLLDSRFFDPKRYDLASVGRYKINKKLHIKNRLFNQRLAETLIDPETG
EILAEKGAILDRRTLDKVLPYLENGIGFKKLYPNGGVVEDEVTLQSIKIYAPTDQEGEQT
INVIGNAYIEEGVKNITPSDIISSISYFFNLLHGVGDTDDIDHLGNRRLRSVGELLQNQF
RIGLSRMERVVRERMSIQDTNTITPQQLINIRPVIASIKEFFGSSQLSQFMDQTNPLAEL
THKRRLSALGPGGLTRERAGMEVRDVHYSHYGRMCPIETPEGPNIGLINSLSSFAKVNRF
GFIETPYRRVDPETGKVTPRIDYLTADEEDNYVVAQANARLNDDGSFVDDSIVARFRGEN
TVVPKDRVDYMDVSPKQVVSAATACIPFLENDDSNRALMGANMQRQAVPLMQPESPIVGT
GMEYVSAKDSGAAVICRHPGIVERVEAKNIWVRRYEEVDGQKVKGNLDKYSLLKFVRSNQ
GTCYNQRPIVSVGDEVVKGEILADGPSMEKGELALGRNVMVGFMTWDGYNYEDAIIMSER
LVKDDVYTSIHIEEYESEARDTKLGPEEITRDIPNVGEDALRNLDERGIIRVGAEVKDGD
LLVGKVTPKGVTELTAEERLLHAIFGEKAREVRDTSLRVPHGGGGIILDVKVFNREDGDE
LPPGVNQLVRVYIVQKRKISEGDKMAGRHGNKGVISKILPEEDMPYLPDGTPIDIMLNPL
GVPSRMNIGQVLELHLGMAARRLGLHVASPVFDGAREEDVWETLEEAGMSRDAKTVLYDG
RTGEPFDNRVSVGIMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEV
WALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGDNVPEPGVPESFKVLIKELQSLGM
DVKILSSDEEEIEMRDLEDDEDAKQNEGLSLPNDEESEEFVSADAERDVVTKE
NT seq 3582 nt   +upstreamnt  +downstreamnt
ttgacaggtcaactagttcagtatggacgacaccgccagcgcagaagctatgcacgcatt
agcgaagtgttagaattaccaaatctcattgaaattcaaacctcttcttatcagtggttt
cttgatgagggtcttagagagatgtttcaagacatatcgccaattgaggatttcactggt
aacctctctctggaatttatcgactacagcttgggcgagcctaagtatccggtagaagaa
tcaaaagagcgcgacgtgacctactcagctccgctgcgtgttaaagtccgcttaatcaac
aaagagaccggtgaagtaaaggatcaggatgtcttcatgggtgatttccctattatgaca
gacactggaacctttattatcaacggtgcggaacgggtcattgtatctcagctcgttcgt
tctccaagtgtatattttagtggtaaagtagacaaaaacggtaagaaaggttttaccgcg
actgtcattccaaaccgtggcgcatggttagaatacgagactgatgcgaaagatgttgtt
tatgtacgcatcgatcgcacacgtaagttgccggttacggttcttttgcgtgctcttggc
ttcggatctgaccaagagatcattgatctcatcggtgaaaacgagtatttgcgcaatacg
cttgataaagataatacggaaaacaccgataaagcgcttcttgaaatctacgagcgtctt
cgtccaggagagccgcctacagtagaaaacgcaaaaagcctgcttgattcaaggttcttt
gatccgaaaagatatgaccttgcaagtgtaggacgttataaaattaataaaaagcttcac
atcaaaaacagactgtttaatcagcggcttgctgaaacgctgatcgatcctgaaacaggc
gaaattcttgccgaaaaaggcgcgattttagacagaagaacgcttgacaaagtcctgcct
taccttgaaaacggaatcggttttaaaaagctgtatccgaacggcggagttgttgaagat
gaagtgacgcttcagtctattaaaatctatgccccgacagatcaagaaggggagcagaca
atcaatgtgattggaaatgcttatattgaagaaggcgttaaaaatattacaccttctgat
attatctcttccatcagctatttctttaacctgcttcacggagtgggcgataccgacgat
atcgaccatttaggaaaccgccgtctccgttcagtgggagagcttctgcaaaaccaattc
cgtatcggtttaagcagaatggagcgtgttgttcgtgaaagaatgtctattcaagataca
aacacgatcacgccacagcagctgatcaatattcgccctgtcatcgcatcaatcaaagag
tttttcggaagctcgcagctttctcagtttatggatcagacgaatccgcttgctgagctg
acgcataagcgccgtctgtcagcgctcggaccgggcggtttgacccgtgagcgcgccgga
atggaagtccgtgacgttcactattcccactacggccggatgtgtccgattgaaactcct
gagggtccaaacatcggcttgatcaactcgctttcttcattcgcgaaagtgaaccgtttc
ggcttcatcgaaacgccgtatcgccgcgttgaccctgagactggaaaagtaacgccgaga
atcgattacttgacagctgatgaagaagacaactatgtcgttgcccaggctaacgcacgt
ctgaatgatgacggatcttttgtggatgacagcatcgtcgcccgtttcagaggggagaac
accgttgttccgaaagaccgcgtcgactatatggacgtttcgcctaaacaggttgtctct
gccgcgactgcatgtattcctttcttggaaaacgacgactcaaaccgcgccctaatggga
gcgaacatgcaacggcaggctgtacctcttatgcagcctgaatctccgatcgtcggaacc
ggaatggagtatgtatctgcaaaagactccggtgccgctgttatttgccgccatcctgga
atcgttgaacgggtggaagcgaaaaacatctgggtgcgccgctatgaagaagtcgacggc
cagaaagtcaaaggaaaccttgataaatacagcctgctgaagtttgttcgttccaaccag
ggaacttgctacaaccagcgtccgatcgtaagcgtcggtgatgaggttgtaaaaggtgaa
attttagctgacggtccgtctatggaaaaaggtgagcttgcccttggacgcaacgtcatg
gtcggctttatgacatgggatggctacaactacgaggatgccatcatcatgagcgaacgc
cttgtaaaagacgacgtatacacgtctattcatattgaggaatacgaatcagaggcccgg
gatacaaaactcggacctgaagaaattacacgcgatattccaaacgtcggtgaagacgct
cttcgcaatctcgatgaacgcggaattatccgtgtcggtgctgaagtaaaagacggagat
cttcttgttggtaaagtaacgcctaaaggtgttacagagcttactgcagaagagcgcctg
cttcacgccatcttcggcgaaaaagcgcgtgaagtccgcgatacgtcgctgcgtgtgcct
cacggaggcggcggtatcatccttgatgtaaaagtgttcaaccgcgaagacggagacgaa
ctgcctccgggcgttaaccagctcgtccgcgtttacatcgttcagaaacgtaaaatttct
gaaggggacaaaatggccggacgccacgggaacaaaggtgttatttcgaaaatccttccg
gaggaagatatgccgtatctgcctgacggaacaccgattgacatcatgttaaacccgctg
ggcgtaccatcgcgtatgaacatcgggcaggtgttggagctgcaccttggtatggctgca
cgccgtctcggtctgcatgtcgcgtcgccggtatttgacggtgcccgcgaagaagatgtg
tgggaaacgcttgaagaagccggcatgtcaagggacgcaaagacagtcctttacgacggc
cgaactggagagccgtttgacaaccgggtgtctgtcggcatcatgtacatgatcaaattg
gctcacatggttgacgacaaattgcacgcgcgttctacaggtccttactcactcgttacc
cagcagcctcttggaggtaaagcgcagttcggtggacagcgttttggagagatggaagtt
tgggcgcttgaagcttacggtgcagcatatacacttcaagaaatcctgactgttaaatcg
gatgatgtcgtaggccgtgtgaaaacatacgaagccatcgtaaaaggcgacaatgttcca
gaacctggtgttccggaatcgttcaaagtattgatcaaagagcttcaaagcttaggtatg
gacgtcaaaatcctatcaagcgacgaagaagaaatcgaaatgagagacttggaagacgac
gaagacgcgaaacaaaacgaagggctttctctgccgaatgatgaagagtccgaagaattc
gtttctgctgacgcagagcgcgatgtcgtcacaaaagaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (16)   

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