KEGG   Bacillus licheniformis ATCC 14580: BL02667
Entry
BL02667           CDS       T00197                                 
Symbol
yjcD
Name
(GenBank) putative ATP-dependent DNA helicase YjcD
  KO
K03657  ATP-dependent DNA helicase UvrD/PcrA [EC:5.6.2.4]
Organism
bli  Bacillus licheniformis ATCC 14580
Pathway
bli03420  Nucleotide excision repair
bli03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bli00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    BL02667 (yjcD)
   03430 Mismatch repair
    BL02667 (yjcD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bli03400]
    BL02667 (yjcD)
Enzymes [BR:bli01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     BL02667 (yjcD)
DNA repair and recombination proteins [BR:bli03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     BL02667 (yjcD)
   MMR (mismatch excision repair)
    Other MMR factors
     BL02667 (yjcD)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 UvrD_C_2 Viral_helicase1 AAA_30 CPSase_L_D3 AAA_12 Branch_AA_trans
Other DBs
NCBI-ProteinID: AAU22839
UniProt: Q65L81
Position
complement(1282571..1284853)
AA seq 760 aa
MKCARFNNRDIHIHTYSREHLQFLFDEARKDRITCKYCGLPLRLKLSIHEEPHFFHRENG
DFSQCEAACLNEKTEQKTKQNDYTESGVFRLPKGKAIGEEKKADTDFWTPPREASIHSPF
SPAAETAPEPVFPNVPLNEKQLAAVTAPEEPLLVLAGAGSGKTRVLTARAAYMISRLDIP
PSAILLVTFTTKAVKEMKERMASLYGLPMQTVNRLVTGTFHSFFYKILYHHDPAKWNGEH
LLKWEWQKEQYIKMALAEEGLDEKDFPVDQAIQQIGYWKNAYLPGEQIPLEDEWEKRVHR
LYRHYEEQKAARRQFDFDDMASACWQLFQEQPDILKRYQTRFHAILIDEFQDINPVQYAI
IKLLASPENNLTCVGDDDQSIYAFRGSSPSFILDFEKDYPKAKTVRLTTNYRSSHPIVAS
ADMVVRKNKKRFPKTLSAARDDRQKPLLFYPYDEEEEAIMIVSDIQEKIEMGAKPDDFAI
LYRTNSSGRAIFERLHQSAIPYTAEQGVRSFYSRRIVRQMLAYLYLSQNQDDAEAVKQIL
PALFLKQSALNTLKALSITEDCTMVQALEKLTDIKPFQLDKIKKIVPFFPGLKTMKPVEA
ISFAEEKMGFSDYLKKRGNEGNKLEKGSDDLRDLKTAAKKFKTIPEFLEHVDHMRAAEKQ
KADGYGVQLLTIHRAKGLEFKTVYILGVQDGSIPHDFALETARKGDETALEEERRLLYVA
MTRAEDRLYISVPSFRRGRTAYRSRFLQPILRPNPQVQLQ
NT seq 2283 nt   +upstreamnt  +downstreamnt
ttgaaatgcgcccgattcaataaccgagacattcatatacatacatattcgagagaacac
ctgcaattcctctttgatgaagcaagaaaagacaggatcacgtgtaaatattgcggcttg
ccgctcagactgaaattgtcgattcatgaagagccgcattttttccaccgggaaaacggg
gatttttctcaatgtgaagcggcttgcttaaatgagaagacagagcagaagaccaaacag
aacgattatactgaaagcggcgttttccgcctcccgaaaggcaaagcgatcggagaggaa
aagaaggcggacacggacttctggacgccgcctcgcgaagcttccatccattctcctttc
tctccagcggcagaaacggctccggaaccggtctttccgaatgtgccgctgaatgagaaa
cagcttgccgccgtgacggcccccgaagaaccccttctcgttctggccggcgcgggaagc
ggaaaaacgcgggtattaaccgcgcgagcggcttatatgatatcccggctcgatatcccg
ccttctgccatattgctcgtcacattcacgacaaaagctgtgaaagaaatgaaagagcgg
atggcctcgctatacggtttgccgatgcagactgtgaaccgcctcgtgacaggcaccttc
cacagctttttttacaaaattctttatcatcatgatccggccaaatggaatggcgagcac
ctgctgaaatgggaatggcaaaaagaacagtacatcaaaatggcccttgccgaagaaggg
cttgatgaaaaagactttccggttgaccaggcgatccagcagatcggctactggaagaac
gcttatcttccgggtgaacagattccgcttgaagacgaatgggaaaagcgggttcaccgg
ctgtaccgtcattatgaagaacaaaaagcagcgcggcgccaattcgatttcgacgatatg
gcatctgcgtgctggcagctgtttcaagaacagccggacattttaaagcgatatcagacg
cgctttcacgcgattttgattgacgaatttcaggacattaaccctgttcaatacgccatc
atcaagctcttggcaagccccgaaaacaacctgacctgtgtcggggatgatgatcagtca
atctacgcgttcagagggagcagtccttcttttatactcgattttgaaaaagattatccg
aaggcgaaaacggtccgcctcacgacgaattacagatcgagccatccgattgtggcaagc
gccgatatggtcgtaaggaaaaacaaaaagcgttttccgaaaacattaagcgccgcgaga
gacgaccgccaaaaaccgctcttattttatccttatgatgaagaggaagaagcgattatg
atcgtctctgatatccaagaaaaaattgaaatgggcgcaaagcctgatgacttcgccatc
ctataccggacaaacagcagcggccgcgccatttttgaacgtctgcaccagtcagccatt
ccgtacacggctgaacaaggcgtccggtcgttttacagcaggaggatcgtccggcagatg
ctggcctatctctacttaagccaaaatcaagatgacgcggaagccgtaaagcagatttta
cccgccctctttctcaagcagtccgctttaaacacgcttaaagcgctctcgattacagaa
gattgcacaatggttcaggcgcttgaaaaattgactgacattaaaccgtttcagcttgat
aaaataaaaaaaatcgttccttttttcccaggcttaaaaacgatgaagccggttgaagcc
atctctttcgcagaagaaaagatgggcttttccgattacctgaaaaagcgcggaaacgaa
gggaacaagctcgaaaaagggtctgacgatctgcgggatctcaaaactgcggcaaaaaaa
ttcaaaacgatccccgaatttcttgagcatgtcgatcatatgagagccgcggaaaagcaa
aaagctgacggatacggtgttcagcttttgacaattcatcgtgcgaaagggcttgaattt
aaaacggtctatatactgggagtgcaggacggctcgattccgcatgactttgccctggag
acagcgagaaaaggcgatgaaaccgctcttgaagaagagcggaggctgctgtatgtcgcc
atgacccgggccgaggaccgcctgtatatcagcgtcccttccttcagaaggggaagaacg
gcataccgctcaaggtttttacagcctattttacgcccgaatccacaagttcagctgcaa
taa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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