KEGG   Bifidobacterium longum subsp. longum KACC 91563: BLNIAS_02191
Entry
BLNIAS_02191      CDS       T01845                                 
Name
(GenBank) DNA-directed RNA polymerase beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
blk  Bifidobacterium longum subsp. longum KACC 91563
Pathway
blk03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:blk00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    BLNIAS_02191
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:blk03021]
    BLNIAS_02191
   03400 DNA repair and recombination proteins [BR:blk03400]
    BLNIAS_02191
Enzymes [BR:blk01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     BLNIAS_02191
Transcription machinery [BR:blk03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     BLNIAS_02191
DNA repair and recombination proteins [BR:blk03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      BLNIAS_02191
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4
Other DBs
NCBI-ProteinID: AEI98029
Position
complement(1733395..1737432)
AA seq 1345 aa
MLDVNAFDKIRIGLATADDIRGWSHGEVKKPETINYRTLKPEKDGLFGEQIFGPTRDWEC
ACGKYKRVRFKGIVCERCGVEVTRSRVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLNV
TPKDLERVIYFASYMVTEVNEDERHNDLPGLQDEFDSEIKRLEQRRDSDIEARAKKVEED
LAALEEAGEAKGPARTKLRNGAERDMAAIRTRYNDQIARVDAVFDKFKKLKPGDMVDDVD
LWREMQDRYGDYFDGCMGAEAIKKRLQSLDLETISKELREEIKDASEQRKTKALKRLKVV
NAFLTTGNKPEAMVLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIE
LGAPEIMLNNEKRMLQEAVDSLFDNGRRGRPVTGASNRPLKSLSDMLKGKQGRFRQNLLG
KRVDYSGRSVIVVGPSLRMHQCGLPKPMALELFKPFVIKRLVDLNYAQNMKSAKRLVDRG
DAEVWGVLEEVISEHPVLLNRAPTLHRLGIQAFEPILVEGKAIHLPPLACAAFNADFDGD
QMAVHLPLSAEAQAEARSLMMASDNILKPADGHTVTMPSQDMILGLYYLSTVLEGVKGQG
RVFSSLEEAEMALDRHEIDMQAKVLIRLPESFVLPKNWEPGEVKVLDPREGEDEVVKEER
FHDGTVLFATSYGRILFNETLPTDYPFVNEQVAKGRLSKIVDDIAMRYSTQQVAATLDAL
KDLGFTRAPWSGVSFAFSDVNEPPERDEKIAEYEAKADKVNANYEMGLLTEEARRQELID
LWTECTAEVSKEVEEKFDPTSNLAIIVQSGARGNMMQINQIAGMRGLVANPKGEIIPRPV
KSNYRDGLSVLEYFISQHGARKGLADTALRTAESGYLTRRLVDVSQDVIVREEDCGTKAG
LPIRVAERDNDGNLVLVKAADGGPYSRLLAADVIDPADGQTVLYKRDDALSMDVLNDLVA
HGVEEVKCRSVLTCESKRGVCAKCYGWSLATNKLVDVGETVGIVAAQSIGEPGTQLTLRS
FHSGGVAAASDITQGLPRVTELFEARTPKGEAPITEFAGSIKIVENDRGRQIILTPDADS
GAPKEDGVIKPITYQVSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIV
EEVHTVYRSQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDLLPGELVDNARFREINRNIVK
NGGRPAVGRPALMGITKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIG
KLIPAGTGLARYRNAVVEPDKAIRDTIYPNFGLGGDGDLGDASFSDADLSDLNFSNLEFG
DLKLGDDFNPDDFYSDQGGQPDIEE
NT seq 4038 nt   +upstreamnt  +downstreamnt
gtgctggacgtcaacgcatttgacaagattcgcatcggccttgccaccgccgatgacatc
cgtggttggagccacggtgaggtcaagaagcctgaaaccatcaactaccgtacgctgaag
cctgagaaggacggtctgttcggcgaacagatcttcggcccgacccgtgactgggagtgc
gcctgcggcaagtacaagcgcgtgcgcttcaagggcatcgtctgcgagcgatgcggcgtc
gaagtgacccgcagccgcgtgcgccgtgagcgcatgggccacatcgagctcgccgccccg
gtgacgcacatctggttcttcaagggtgtgccttcccgcctcggctacctgctgaacgtc
accccgaaggacctggagcgcgtgatttacttcgcctcctacatggtcaccgaggtgaac
gaagacgagcgtcacaacgatctgcccggcctgcaggacgagttcgattccgagatcaag
cgccttgagcagcgccgtgactccgacattgaagcccgcgccaagaaggtcgaagaggat
ctcgccgcccttgaggaggccggcgaggccaagggcccggcccgcaccaagttgcgtaac
ggtgccgagcgtgatatggctgccatccgcacccgctacaacgaccagatcgcccgtgtg
gacgccgtcttcgacaagttcaagaagctcaagcccggcgacatggtcgacgacgtggac
ctgtggcgcgagatgcaggaccgctacggcgattacttcgacggctgcatgggcgccgaa
gccatcaagaagcgcctgcagtccctcgacctggagaccatctccaaggaactgcgcgag
gagatcaaggacgcttccgaacagcgtaagaccaaggccctgaagcgcctcaaggtcgtc
aacgccttcctgaccaccggcaacaagccggaggccatggtgctcgacgtgatcccggtc
atcccgccggacctgcgcccgatggtccagctcgacggtggccgcttcgccacctccgac
ctcaacgacctgtaccgccgtgtgatcaaccgtaacaaccgtctgaagcgactgatcgag
ctcggcgcccctgaaatcatgctcaacaacgagaagcgcatgctccaggaagccgtcgac
tccctgttcgacaacggccgtcgtggtcgcccggtcaccggtgcctccaaccgtccgctg
aagtccctgtccgacatgctcaagggtaagcagggtcgtttccgtcagaacctgctcggt
aagcgagtcgactactccggccgttccgtgatcgtggtcggcccgtccctgcgcatgcac
cagtgcggtctgccgaagccgatggccctcgagctgttcaagccgttcgtcatcaagcgc
ctcgtggacctgaactatgcgcagaacatgaagtccgccaagcgtcttgtggaccgcggc
gacgccgaagtgtggggcgtgctcgaggaggtcatctccgagcaccccgtgctgctcaac
cgtgcacctacgctgcaccgtctgggtattcaggcattcgagccgatcctggtggaaggc
aaggccatccacctgccgccgctggcctgcgccgccttcaacgccgacttcgatggtgac
cagatggcagtccacctgccgctctccgccgaagcccaggccgaggcccgctcgctgatg
atggcttccgacaacatcctgaagccggccgacggccacaccgtgaccatgccgagccag
gatatgatcctcggtttgtactacctgtccaccgtgctggaaggcgtcaagggccagggc
cgcgtgttctcctcgctggaagaggccgaaatggccctcgaccgccacgagatcgacatg
caggccaaggtgctcatccgcctgcccgagagcttcgtgctgccgaagaactgggagccc
ggcgaagtcaaggtgctcgacccgcgcgaaggcgaggacgaggtcgtcaaggaagaacgc
ttccacgacggcaccgtgctgttcgccacctcctacggccgcatcctgttcaacgagacc
ctgccgaccgactacccgttcgtcaacgagcaggtggccaagggccgtctgtccaagatc
gtcgatgacatcgccatgcgttactccacccagcaggtggccgccacgctggatgccctg
aaggatctcggcttcacccgcgcaccgtggtccggcgtgtccttcgcgttctccgacgtg
aacgagccgcccgagcgcgacgagaagatcgccgagtacgaggccaaggccgacaaggtc
aacgccaactacgagatgggtctgttgaccgaggaagctcgccgtcaggaactcatcgac
ctgtggaccgagtgcaccgccgaagtgtccaaggaagtcgaggagaagttcgacccgacc
tccaacctggccatcatcgtgcagtctggtgcacgaggcaacatgatgcagatcaaccag
attgcaggtatgcgaggcctcgtggctaacccgaagggtgagatcattcctcgtcctgtg
aagtccaactaccgcgacggcctgtccgtgctggagtacttcatctcccagcacggtgca
cgtaagggtctggccgataccgcactgcgtaccgcagaatccggttacctgacccgtcgt
ctggtcgacgtctcccaggacgtcatcgtgcgcgaagaggactgcggcaccaaggccggt
ctgcccatccgcgtcgccgagcgcgacaacgacggcaacctggtgctcgtcaaggccgcc
gacggtggcccgtactcccgtctgctcgccgccgacgtcatcgacccggccgacggacag
accgtgctgtacaagcgcgacgacgccctgtccatggacgtgctcaacgacctcgtggcc
cacggcgtcgaggaagtcaagtgccgttccgtgctgacctgcgagtccaagcgcggcgtg
tgcgccaagtgctacggctggtccctggccaccaacaagctggtcgatgtcggcgagacc
gtcggtatcgtcgccgcccagtccatcggtgagcctggtacccagctgacgctgcgttcc
ttccactccggtggtgtggccgcggcctccgatatcacccagggtcttccccgtgtcacc
gagcttttcgaggcccgcaccccgaagggtgaggccccgatcaccgagttcgccggcagc
atcaagatcgtggagaacgatcgcggtcgccagatcatcctgaccccggacgccgattcc
ggcgcaccgaaggaagacggcgtgatcaagccgatcacctaccaggtctccaagcgcgtg
ccgctcaaggttgccgacggcgaccacatcaaggtcggcacccagctggtcgaaggttct
gtggaccccaagaagatcctcaccatcctcggcaagcgcgccgcccaggtcaacatcgtg
gaggaagtgcacaccgtgtaccgctcccagggtgtggatatccacgacaagcacatcgag
gtcatcgtgcaccagatgacccgtcgcgtgaccatcatcgactccggcgacaccgacctg
ctgccgggtgagctggtggacaacgcccgcttccgcgagatcaaccgcaacatcgtcaag
aacggtggccgtccggccgtcggtcgtccggcgcttatgggtatcaccaaggcgtcgctg
gccaccgactcctggctgtccgccgcatccttccaggagaccacccgcgtgctcaccgaa
gccgccctctccgagaaggtcgacgacctcaagggcctcaaggagaacgtcatcatcggt
aagctcatcccggccggtacgggcctcgcgcgctaccgcaacgccgtggtcgagcctgac
aaggccatccgcgacaccatctacccgaacttcggtctgggcggcgatggcgatctcggc
gacgcgagcttctccgacgccgacctgtctgacctgaacttctcgaacctcgagttcggc
gatctgaagctcggcgacgacttcaacccggatgatttctactccgatcagggcggtcag
cctgacatcgaggagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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