KEGG   Bifidobacterium longum subsp. longum JDM301: BLJ_0155
Entry
BLJ_0155          CDS       T01240                                 
Name
(GenBank) DNA topoisomerase I
  KO
K03168  DNA topoisomerase I [EC:5.6.2.1]
Organism
bll  Bifidobacterium longum subsp. longum JDM301
Brite
KEGG Orthology (KO) [BR:bll00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bll03032]
    BLJ_0155
   03400 DNA repair and recombination proteins [BR:bll03400]
    BLJ_0155
Enzymes [BR:bll01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.1  DNA topoisomerase
     BLJ_0155
DNA replication proteins [BR:bll03032]
 Prokaryotic type
  DNA Topoisomerases
   BLJ_0155
DNA repair and recombination proteins [BR:bll03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BLJ_0155
SSDB
Motif
Pfam: Topoisom_bac Toprim_C_rpt Toprim Toprim_4 SBP_bac_3 HTH_23 Toprim_2
Other DBs
NCBI-ProteinID: ADG99648
UniProt: D6ZXK2
Position
199701..202787
AA seq 1028 aa
MATKLVIVESPTKAHKIGDYLGKGYTVMASVGHIRDLAQPSQVPAADKAKFGKFGVDVND
GFKPYYIVDGDKKRTVSELKSALKNADELYLATDEDREGEAIAWHLVQTLKPKVPVKRMV
FHEITKNAINASLGKTRDVDSHMVDAQETRRILDRLYGYELSPVLWRKVGPGLSAGRVQS
VATRLIVERERERMAFKRAPYWDIVAMLAAPDALGERAEFSARMIALGGKRLAGSKDFGA
DGQLTPDGFAANVRQLDEAGATAVAEALRTADFTVMSMETKPYRRRPQPPFTTSTLQQTA
GNRLGMGARVVMRAAQSLYENGYITYMRTDSVTLSQEAITAARNAVSYHFGDKFLSAEPK
QYATKTAGAQEAHECIRPAGSRFHDPDELASKLPGDQLRLYTLIWQRTLACQMADATGST
ATVRLSAPAGPTEGEAVFQASGTVIEFPGFMKATGEGRKPKAAAPGAGAGSDQAAAAGKT
DVKAVRGDASESNTSLPPMSVGQQVEASDIEPDGHETQPPARYTEATLVKTLEAKEIGRP
STYASIISTIMDRGYVYERGRALIPSWLAFSVTKLLETNFPKLVDYQFTAEMENGLDRIA
HGEESGRDWLTHFYFGSGEGAARNADEAHEGLQQQVAQLGEIDARAINTIDIGDGLHVRV
GRYGPYLEDMEHLDVEGNPKRASLPDTIAPDELTVAVARDLIDNHSGGPRELGVDPVSGG
TVEVRNGRFGPYVALVPPAEASAGAAGGTAGASAAKKGSKKAAAAAASRPKMASLFKTMS
PESLSLEDALKLLSLPREVGTYEETNAETGEVSECTVAANNGRYGPYLTKTGADGKSETR
SLASEDEIFTVDIDKAKELFSQPKYGRGRGRGAAKPPLRDLGKDPNTGKNVTIKDGRFGA
YITDGETNRTVPRQYTPESITPDDAFRLLAEKRAAGPSTRGRRGAGRAGAAKSGAKGAKK
GAASAATNAAEAKRAERRAEVKKLANKGWSNQRIAEKLSSTAATVKKDVDWLTANEGYER
PAVIPKRG
NT seq 3087 nt   +upstreamnt  +downstreamnt
atggctaccaaactggtgattgtggagtctccgaccaaggcccacaagatcggtgactac
ctgggcaaggggtacaccgtcatggcgtcggtcggtcatatccgcgacctcgcgcagccc
agccaggtgcccgcggcagacaaggccaagttcggcaagttcggcgtggacgtcaacgac
gggttcaagccgtattacatcgtcgacggcgacaagaagcgtacggtcagcgaactcaaa
tcggccctgaagaacgccgacgaactctatctggcgactgatgaggatcgcgagggcgag
gccatcgcgtggcacttggtgcagaccttgaaacccaaggtgccggtcaagcgcatggtg
ttccacgagatcaccaagaacgccatcaacgcctcgctgggcaaaacgcgcgatgtcgac
agccatatggtcgacgcacaggagacccgccgcatcctcgaccgtctgtacggctatgag
ctgtcgccggtgctgtggcgcaaggtgggcccgggcctgtccgccggccgcgtgcagtcc
gtggccacccgcctgatcgtggaacgcgaacgcgaacgcatggcattcaagcgtgcgccg
tactgggatatcgtcgccatgttggccgcgcctgacgcgctgggggagcgtgccgaattc
tccgcccgcatgatcgcgctcggcggcaagcgactcgccggctccaaggatttcggtgcc
gacggccagctgaccccggacgggttcgcggcgaacgttcgccagcttgatgaggctggt
gccactgccgtggctgaagcgctgaggaccgccgatttcactgtgatgtcgatggaaacc
aagccgtaccgccgccgcccgcagccgccgttcaccacctcgaccctgcagcagaccgcc
ggcaatcgcctcggcatgggtgctcgcgtcgtgatgcgcgcggcccaaagcctgtacgag
aacggctacatcacctatatgcgaaccgattcggtgacgctgtcgcaggaggccatcacc
gccgcccgcaacgccgtctcctaccatttcggcgacaagttcctctccgccgagcccaag
cagtacgccaccaaaaccgctggcgcgcaggaagcccacgagtgtattcgcccggcgggc
tcgcgcttccacgacccggatgagctggcttccaaacttcccggcgaccagctgcgccta
tacacgctgatctggcagcgcacgctcgcctgccagatggctgacgccaccggctccacc
gccaccgtgcgcctgtctgcgccggccggccccaccgagggcgaggccgtgttccaagcg
tccggcactgtcatcgaattccccggctttatgaaggccacgggggaggggcgcaagccc
aaagccgccgctcccggcgctggggctggctcggaccaggctgctgccgccggcaagacg
gacgtcaaggccgtcaggggtgacgcctccgaatccaacacctccctgccgccgatgagc
gtcggccagcaggtcgaggcaagcgacatcgaaccggacggccatgaaacccagccgccg
gcccgttataccgaggccacgctggtcaagacgctggaagccaaggaaatcggtcgcccg
tccacttacgcgagcatcatctccacaatcatggatcgcggttacgtatacgagcgtggc
cgtgcgctgatccccagctggctcgccttctccgtgaccaagttgctcgagacgaacttc
cccaagctggtcgactaccagttcaccgccgagatggaaaacggccttgaccgcatcgcc
cacggcgaggaatccggccgcgactggctcacccacttctacttcggttccggcgagggc
gccgcccgcaacgccgacgaggcgcacgaaggcctgcaacagcaggtcgcgcagctcggc
gagatcgacgcgcgcgccatcaacaccatcgacatcggcgacggcctgcacgtgcgcgtc
ggccgttacggcccgtatctggaagacatggagcatctggacgtcgaaggcaacccgaag
cgcgcgtctctgccggacaccatcgcgccggatgagctgacggtggccgtggcccgcgat
ttgatcgacaaccactccggtggaccgcgcgagctgggcgttgacccggtatccggcggt
accgtcgaggtgcgcaatgggcgtttcggcccgtatgtggcgctggtgccgccggctgag
gcttcggctggcgctgctggcggtactgctggtgcttctgcggccaagaagggttcgaag
aaggccgcggccgccgccgcgtcgcgcccgaagatggcctcgttgttcaagacgatgagc
cctgaatcgctgtcgctggaagacgcgctaaagctgctgagcctgccgcgcgaagtgggc
acatacgaggaaaccaacgccgaaaccggcgaggtatccgaatgcacggtggccgccaac
aacggtcgctacggcccctatctgaccaagacgggtgccgacggcaagtcggagacccgc
tcgctggcctcggaagacgagatcttcacggtcgatatcgacaaggccaaagaactgttc
tcgcagcctaagtacggccgcgggcgtggccgtggtgccgccaagccgccgctgcgtgat
ttgggcaaggacccgaacaccggcaagaacgtgaccatcaaggacggccgtttcggcgcg
tacatcaccgatggcgagaccaaccgcacggtgccgcgtcagtacacgcctgaatccatc
acccctgatgacgccttccgactgctcgccgaaaagcgtgcggctggtccctccacccgt
ggccgtcgcggtgctgggcgtgccggtgccgcgaagtcgggagccaagggagccaagaag
ggcgctgcttcggctgcgaccaatgccgccgaggccaagcgcgccgaacgccgtgccgag
gtgaagaagctggcgaacaagggctggtccaaccagcgcatcgccgaaaagctcagctcc
accgccgccaccgtcaagaaggatgtcgactggctgaccgccaacgagggctacgagcgc
cccgccgtaattcccaagcgtggctga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system