KEGG T01240: BLJ

Bifidobacterium longum subsp. longum JDM301: BLJ_1173

Entry

BLJ_1173          CDS       T01240

Name

(GenBank) DNA topoisomerase (ATP-hydrolyzing)

K02470

DNA gyrase subunit B [EC:5.6.2.2]

Organism

bll Bifidobacterium longum subsp. longum JDM301

Brite

KEGG Orthology (KO) [BR:bll00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bll03032]
    BLJ_1173
   03400 DNA repair and recombination proteins [BR:bll03400]
    BLJ_1173
Enzymes [BR:bll01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.2  DNA topoisomerase (ATP-hydrolysing)
     BLJ_1173
DNA replication proteins [BR:bll03032]
Prokaryotic type
  DNA Topoisomerases
   BLJ_1173
DNA repair and recombination proteins [BR:bll03400]
Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHIIR (short-homology-independent illegitimate recombination)
     Facilitator
      BLJ_1173

SSDB

Motif

Pfam:

DNA_gyraseB DNA_gyraseB_C Toprim HATPase_c HATPase_c_3

Other DBs

NCBI-ProteinID:

ADH00624

UniProt:

D6ZUR8

Position

complement(1369987..1372302)

AA seq 771 aa
MPKEEYGAKDLAVLEGLDAVRKRPGMYIGTTDSQGLMHCLWEIIDNSVDEALAGFCNDIV
VTLHTDGSVEVADNGRGIPVDKEPKTGLSGVEVVLTKLHAGAKFGNSSYNAVGGLHGVGS
SVVNALSSRLDVEVDRDGKTHHMTFHQGHPGVYTDADPANPSPDSPFKRTRKNRPTELEI
IGKVSPKTTGTRIRYWYDPEIFNKTAEFSYEQLIDRVRQTSFLVPGLKITIVDENVPETA
TDTAEAIDADAVEPAQDQAPALDVSSNDAELFDDSTEAQADSTESLSEEDFSLTAGDQVV
DGAFGEQPAHPRVVEFLHTGGVKDFVDFLSKGEPISDIWRIQGEGTYKEETQAVGEGGEL
HAQEIERTCGVDIALRWVNGYDTTIMSFVNIVETPGGGTHVDGFMNAITKQIRKAVEDNA
RKLKVNMKDSAMKVERDDIQAGLVAVVTARVAEPQFQGQTKDVLGTAQVKPIVTRLTDKQ
FGEMITGSKRGYKEQSGRVLEKIVGEMHARIQSRKAKEVTRRKNALESASMPAKLSDCQP
GNDDVAELFIVEGDSALGTAKAARNAGFQALLPIRGKILNVQKASITQMLSNKECAAIIQ
VVGAGSGQSFDIEQSRYHKIIMMTDADVDGAHIRILLLTLFYRYMRPLIEHGYVYAAVPP
LHRIALTGSHKGEYIYTYSDDELAGKLADLDKKHIGYNDDIQRYKGLGEMDADQLADTTM
DPRTRMLRRIRMEDAAQASEIFSLLMGDDVPPRKQFIVDNADDFDRSKIDT

NT seq 2316 nt +upstreamnt +downstreamnt
atgcccaaagaagaatacggcgccaaggacctagctgttcttgagggcttggatgcggtg
cgcaagcgtccgggcatgtacatcggcaccaccgactcgcagggtcttatgcactgcctg
tgggagatcatcgataactccgtggatgaggccttggccggcttctgcaacgatatcgtg
gtcaccctgcacaccgacggttccgtggaagtcgcggacaatggccgaggcattccggtg
gataaggaaccgaaaaccggcctgtccggcgtggaggtcgtactgaccaaactgcatgcc
ggtgccaagttcggcaattcgtcttataacgccgtcggtggcctgcacggcgtgggctcc
tccgtggtcaatgccctgagctcccgactggacgtcgaagtggatcgtgacggcaagacg
caccacatgaccttccaccaaggtcaccctggcgtatacacggatgccgacccggccaat
ccgtctcccgattccccgttcaagcgcactcgcaagaaccgacccaccgagctggaaatc
atcggcaaggtatctcccaaaaccactggtacccgtattcgctactggtatgatccggag
attttcaacaaaaccgccgaattctcatacgaacagctcatcgaccgcgtgcgccagacc
agcttcctggtgcccggcctcaaaatcaccattgttgacgaaaacgtaccggaaacggcg
actgacaccgccgaagccattgatgccgacgcagtcgaacctgcgcaagaccaggccccg
gctttggacgtctcgtccaacgatgccgaactcttcgacgactccaccgaggctcaagcc
gacagtaccgagagcctgtccgaggaggacttctcgctgacggccggcgaccaggtcgtc
gatggcgcgttcggcgagcagcccgcgcacccgcgcgtcgtggaattcctgcacaccggc
ggcgtcaaggacttcgtcgacttcctatccaaaggcgagccgatctccgacatctggcgc
atccaaggcgagggcacctataaggaggagacccaggccgtgggcgaaggcggtgaactg
cacgcccaggaaatcgaacgcacctgcggcgtggacatcgccctgcgatgggtcaacggc
tacgacaccacaatcatgagcttcgtgaacatcgtggagacgcccggcggcggtactcac
gtggacggtttcatgaacgccatcaccaagcagattcgcaaggcggtggaagacaacgcc
cgcaagctcaaggtgaacatgaaggactccgccatgaaggtggagcgcgacgacatccaa
gccggactcgtggccgtggtcaccgcacgcgtggccgaacctcagttccaaggccagacc
aaggacgtgcttggcaccgcgcaggtcaagccgatcgtcacccggctcaccgacaagcaa
ttcggcgagatgatcaccggctccaaacgcggatacaaggaacaatccggccgcgtgctg
gagaagatcgtcggcgaaatgcacgcacgcatccagtcgcgcaaggccaaggaggtcacg
cgccgcaagaacgcgctcgaatccgcctcgatgccggccaaactctccgactgccagcca
ggcaatgacgacgtggccgaactgttcatcgtcgagggtgattccgcactcggtaccgcc
aaggccgcccgcaacgccggtttccaagcgctgctgccgattcgaggcaagattctgaac
gtgcagaaggcgtcgattacgcagatgctctccaacaaggaatgcgcggccatcatccag
gtggtgggcgccggctccggccagagctttgacatcgaacagtcgcgctaccacaagatc
atcatgatgaccgatgccgatgtggacggcgcgcacatccgtatcctgttgctgacgctg
ttctaccggtacatgcggccgcttatcgaacacggctacgtgtatgccgcagtaccgccg
ctgcaccgcatcgcgttgaccggctcgcacaagggcgaatacatctacacgtattccgat
gacgagctggccggcaaactggccgacctcgacaagaagcacatcggttacaacgatgac
atccagcgatacaagggtctgggcgagatggatgccgaccagctggcggacaccaccatg
gacccgcgcacgcgtatgctgcgccgcatccgcatggaggacgccgcccaggcatccgag
atcttcagcctgctgatgggcgacgacgtgccgccgcgcaagcagttcatcgtcgacaac
gccgacgatttcgaccgctccaagatcgatacctga

All links

Ontology (4)   
   KEGG BRITE (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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