KEGG   Bifidobacterium longum subsp. longum JDM301: BLJ_1829
Entry
BLJ_1829          CDS       T01240                                 
Name
(GenBank) ribonuclease, Rne/Rng family
  KO
K08300  ribonuclease E [EC:3.1.26.12]
Organism
bll  Bifidobacterium longum subsp. longum JDM301
Pathway
bll03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bll00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BLJ_1829
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bll03019]
    BLJ_1829
   03009 Ribosome biogenesis [BR:bll03009]
    BLJ_1829
Enzymes [BR:bll01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.26  Endoribonucleases producing 5'-phosphomonoesters
    3.1.26.12  ribonuclease E
     BLJ_1829
Messenger RNA biogenesis [BR:bll03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BLJ_1829
Ribosome biogenesis [BR:bll03009]
 Prokaryotic type
  rRNA processing factors
   BLJ_1829
SSDB
Motif
Pfam: RNase_E_G RD3 DnaJ_CXXCXGXG Actin_micro
Other DBs
NCBI-ProteinID: ADH01252
UniProt: D6ZWJ6
Position
complement(2172800..2175955)
AA seq 1051 aa
MQRAARSIVPTDNREGFVNDGTDNSTVSNADSAAAVNAAPAAASQPVEPVRRRRGGRRVV
RGTGAAGASLELQVQERTPLFEAPALPNASTAADSKSSDSGDSDESSDSKDSAERPTRRR
TRRVSTADDAAETPRRTRRTSAASSSDTDDDDETPHRPRRAASAVADLDSEDDRPRRSRR
TVSADDFDDDDAPRSRRRSVVDDDDYDEDRSVRRRSRSRQSDDDDYEDRPVRSRLRRAPM
DMDDDDEDRTVRRRSRRAVADTHEDTPDERLFDAVESLPSGHETVRRGKPMTSLLFQEPV
LPAAVDAHDTADTRDDDVDADERPSRRSRRSRSHDDDDAQPRSRRRDDRDDRGRASADRD
ASRDAASGDTNANHDDFDADDTSDSRRSRRSRRLNAQERRAAAEVEQIEEDLELDDIAYS
PIAEEEGDEESDVTRTRSRRRRRRGSRGETGANGEHDTAENDAEDTRSRRRDDRDDHDRD
RDEDDEEQTVTRRRRRRRGGKNGEGTDDQSQNSEQPLVRRSRKQQYIDEITDVEGSTRLE
AKKQRRRDNRRERSRQSQLMEQDFLARRENVDRLMVVREKEHHTQISVVEDNVLVEHYVS
DIQEVQTVGNIYLGRVQNVLPSMEAAFVDIGQSRNGVLYAGEVNWDAARLEGQPRRIELA
FKSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTGVSRKLSERERSRLKNI
VSKIAPKDMGVIIRTAAEGASEDAIVKDLESLVRQWERINAKREEFWHGKRPKLLQGEPD
VAIRVVRDIFNDDFSKLIVEGDKVYDRIEEYLDTMAPDLKDKLEKWDPAEHEGKDVFDKW
SIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRFIGKGKSLEETVTRCNLEASE
EIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMT
RKRIGQGLVEAFSEECPTCKGRGFILHDQPTVSADYDDPYALRGGDPFVKTNKHGRGTAP
APEPAGSSADVKAKLAQIAAAAVAANNTAEE
NT seq 3156 nt   +upstreamnt  +downstreamnt
atgcagcgcgccgcgaggagcattgtgcccactgacaaccgtgaaggtttcgtcaacgac
ggaaccgataattcaaccgtatccaatgccgattcggctgcagccgtgaacgctgcgcct
gccgccgcctcccagcccgtcgaacctgttcgccgtcgtcgtggcggccgccgcgtggtc
cgcggcaccggtgctgccggcgcctccctggaactgcaagtgcaggaacgcaccccgctg
ttcgaagcccccgcgcttcccaatgccagcaccgcggccgattccaagtcatccgattcc
ggcgattccgatgaatccagcgattccaaggattccgccgaacgtccaacccgccgccgt
acgcgccgcgtttccacggccgacgatgccgccgaaacgccgcgtcgcacccgtcgtacg
tccgccgcatcttccagcgataccgatgatgacgacgagactccgcaccgtccgcgccgc
gccgcttccgcagtggccgacttggatagcgaggatgatcgtccgcgccgttcgcgccgc
acggtcagtgccgatgatttcgatgacgatgacgccccgcgttcccgccgccgttcagtc
gtggacgatgacgattacgacgaggaccgttcggttcgccgccgctctcgctcccgccag
tccgacgatgatgactacgaggatcgcccggttcgctcccgcctccgccgtgcgcctatg
gatatggatgatgatgacgaagaccgtacggttcgccgtcgttctcgccgtgcagttgcg
gatacgcacgaggacaccccggatgagcgcctgttcgacgcggtcgaatccctgccctct
ggccacgagaccgtgcgccgtggcaagccgatgacgtccctgctgttccaggaaccggtg
ctgcccgccgccgtggatgcgcacgataccgctgacactcgtgatgacgatgttgacgcc
gacgaacgcccgtctcgtcgctcccgccgctcgcgcagccacgacgatgacgatgcccag
ccgcgcagccgtcgccgcgacgatcgcgacgaccgcggccgcgcctccgccgaccgtgac
gcttcccgtgacgccgcgtccggcgataccaacgccaatcacgacgatttcgacgccgac
gacacctcggactcccgccgttcgcgccgctcccgccgtctgaacgcccaggagcgccgt
gcagccgccgaagtcgagcagattgaggaagacctcgagctggacgatatcgcctactcg
ccgattgccgaggaggagggcgacgaggaatccgacgtcacccgcacccgttcgcgccgt
cgccgccgtcgtggctcacgcggcgaaaccggtgccaacggcgagcacgataccgccgag
aacgatgccgaggatacgcgttcccgccgtcgtgacgatcgcgatgatcatgaccgtgat
cgcgatgaggacgatgaggagcagaccgtcactcgccgtcgccgccgccgtcgtggcggc
aagaacggcgagggcaccgacgaccagagtcagaacagcgaacagccgctggtccgccgc
tcccgcaagcagcagtacatcgacgaaatcaccgatgtggaaggctccactcgtctcgag
gccaagaagcagcgccgccgtgacaaccgccgtgagcgcagccgccagagccagcttatg
gaacaggacttccttgcacgccgcgagaacgtggaccgcctgatggtggtgcgcgagaag
gaacaccacacccagatttccgtggtggaagacaatgttctggtcgagcattacgtctcc
gacattcaggaagtacagaccgtcggcaacatctatcttggccgcgtgcagaacgtgctg
cccagcatggaggccgcattcgtggatatcggccagtcccgcaacggtgtgctctacgcc
ggcgaggtcaactgggatgccgctcgtctcgaaggtcagccgcgccgcatcgagctggcg
ttcaagtccggcgacccggtgctcgtgcaggtcactaaggacccgatcggccacaagggt
gcccgcctgacctctcaggtcacgcttgccggccgcttcctggtgctcgtgccctccggt
ggcatgaccggcgtgagccgcaagctttcggagcgcgaacgcagccgtctgaagaacatc
gtctccaagatcgccccgaaagacatgggcgtgattatccgcaccgcggccgaaggcgca
tccgaagacgccatcgtcaaggatctcgaatcactggtccgccagtgggagcgcatcaac
gccaagcgcgaggaattctggcacggcaagcgcccgaaactcctgcagggcgagcccgac
gtggccatccgcgtggtgcgcgacatcttcaacgacgactttagcaagctcatcgtggaa
ggtgacaaggtctacgaccgtatcgaggaataccttgacaccatggcccccgacctgaag
gacaagctggagaagtgggacccggccgagcacgaaggcaaggacgtgttcgacaaatgg
tccatcgactcccagctgcgtaagggcatggaacgtcaggtctacctgccgtccggcggc
tcgattgtcatcgatcgcaccgaggccatgaccaccatcgacgtgaacaccggccgcttt
atcggcaagggcaagtccttggaagaaacggtgacgcgctgcaacctggaggcgtccgaa
gagatcgcccgccagctgcgcctgcgcgatatcggtggcatggtgatgatcgactatgtg
gatatggtcatgcccgccaaccgcgatctggtgctgcgccgcttggtcgaatgcctggca
cgcgaccgcaccaagcatcaggtggccgaagtcacctcgcttggtttggtgcagatgacc
cgcaagcgcatcggccagggtctggtcgaggcgttctccgaggaatgcccgacctgcaag
ggccgtggtttcatcctgcatgatcagccgaccgtttcggccgactacgacgatccctac
gcgcttcgcggtggcgacccgttcgtcaaaaccaacaagcacggtcgcggcaccgctccc
gctcccgaaccggctggttccagcgccgacgtcaaagccaaactggctcagattgccgcc
gctgccgtcgctgccaacaacacggcggaagagtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (4)   
   Pfam (4)   
All databases (15)   

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