KEGG   Bifidobacterium longum subsp. infantis ATCC 15697 (JGI): Blon_2049
Entry
Blon_2049         CDS       T00794                                 
Name
(GenBank) DNA-directed RNA polymerase, beta subunit
  KO
K03043  DNA-directed RNA polymerase subunit beta [EC:2.7.7.6]
Organism
bln  Bifidobacterium longum subsp. infantis ATCC 15697 (JGI)
Pathway
bln03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bln00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Blon_2049
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bln03021]
    Blon_2049
   03400 DNA repair and recombination proteins [BR:bln03400]
    Blon_2049
Enzymes [BR:bln01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Blon_2049
Transcription machinery [BR:bln03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Blon_2049
DNA repair and recombination proteins [BR:bln03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Blon_2049
SSDB
Motif
Pfam: RNA_pol_Rpb2_6 RNA_pol_Rpb2_2 RNA_pol_Rpb2_7 RNA_pol_Rpb2_3 RNA_pol_Rpb2_45 RNA_pol_Rpb2_1 DUF5887 IF-2
Other DBs
NCBI-ProteinID: ACJ53113
UniProt: B7GUG7
Position
complement(2257317..2260880)
AA seq 1187 aa
MATESTTNTTTIIARADQHDIDLHKASDRVNFGSIKEPIDVPYLLGVQTDSFDWLIGSDR
WKARVEEDEKNGTNTVAHTSGLDEVFNEISPIENFAQTMSLTFSDPYFEEPRHTVQECKE
KDYTYSAPLYVNAEFENGDTGEIKSQTVFMGDFPLQTPHGTFIIGGTERVIVSQLVRSPG
VYFDRQQDRTSDKEVFGAKIIPSRGAWLEFEIDKKDQPQVRVDRKRKQSAIVFLMAIGMT
KSEIAQAFKDYPLVLDALEKETLETQDEALVDLYRKIRPADTPTPEAGKNLLDSFYFNTK
RYDLARVGRYKINRKLGVEADFNDRSLHQEDIIATIKYLVALHDGAATFPGKRNGEDVDL
RVDVDDIDHFGNRRIRQVGELIQNQLRTGLSRMERVVRERMTTQDAEAITPQSLINIRPV
NATIKEFFGTSQLSQFMDQNNPLSGVTNKRRLSALGPGGLSRDRASMEVRDVHPSHFGRM
CPIESPEGPNIGLIGSLATFGRVNPFGFIETPYRKVVNGHVTDEVEYMTADRDLDHVIAQ
ANQELDENGNFVSKSALARVGEEEAVDVPVSSVDYMDVSPRQMVSLGASLIPFLEHDEGH
RALMGTNMQRQAVPLIESERPLVGTGSEWRAANDSGDVIKSEKDGVVTYVSADLIRVMND
DGTTSSYKLAKFQRSNQTTCYNQRPIIHDGERVEAGSVLADGPAIQKGDLALGKNLLIAF
MPWNGYNYEDAVIISQRLVQDDTLSSIHIEEYEIDARETKLGAEEITRDLPNVGEDAVAN
LDERGIIRIGAEVEAGDILVGKVTPKGETELTPEERLLRAIFGEKSREVRDTSLRVPHGE
TGTVIGVKEITREDAEEDGDELPNGVNQMIRVYIAQHRKITVGDKLSGRHGNKGCISRIL
PEEDMPFLADGTPVDIMLNPLGVPSRMNLGQVLELHLGWIAHSGWDISLDPNMEAEWKKL
VPSGAEKAEPNTPVATPVFDGVKPEVLKGLLSTTLPNRDGDRLVGPDGKATLFDGRTGEP
YTKPISVGYMYMLKLHHLVDDKIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWALEA
YGAAYTLHEMMTTKSDDVDGRVRVYGAIVKGDNLPPAGIPESFKVLLKEMQSLSLNVEVL
NAEGVAIDMKDEDDDPASSADDLGFNIGARPDAAAKEDQKAEEPEYQ
NT seq 3564 nt   +upstreamnt  +downstreamnt
ttggctactgagtctacgacgaacaccaccaccatcatcgcacgcgccgaccagcatgac
attgatctgcacaaggcgtcggatcgcgtgaacttcggttccatcaaggaacccatcgat
gtgccctacctgctgggcgtacagaccgacagcttcgattggctgatcggctctgaccgc
tggaaggcgcgcgtcgaggaggacgaaaagaacggtactaacaccgtggcccacacctcc
ggcctcgacgaggtcttcaacgagatctccccgatcgagaactttgcacagaccatgtcc
ctgaccttctcggacccgtacttcgaggagccgcgccacaccgtgcaggagtgcaaggag
aaggattacacctactccgcaccgctgtacgtgaacgccgaattcgagaacggcgacacc
ggcgagatcaagtcccagaccgtgttcatgggcgacttcccgctgcagaccccgcacggt
accttcatcatcggcggcaccgagcgagtcatcgtctcccagctcgtgcgttccccgggc
gtctacttcgaccgccagcaggatcgcacctccgataaggaagtcttcggcgcgaagatc
atcccgagccgcggtgcatggctcgagttcgagatcgacaagaaggaccagccgcaggtg
cgcgtggaccgcaagcgcaagcagtccgccatcgtgttcctcatggccatcggcatgacc
aagtccgagatcgcccaggccttcaaggattacccgctggtgctcgacgccctggagaag
gaaaccctcgagacccaggacgaggccctcgtcgacctctaccgcaagattcgtccggcc
gacaccccgacccccgaggccggcaagaacctgctggactccttctacttcaacaccaag
cgctacgatctggcccgcgtcggccgctacaagatcaaccgcaagctgggtgtcgaggcc
gatttcaacgaccgttccctccaccaggaagacatcatcgccacgatcaagtatctggtg
gccctgcacgacggtgcggcgaccttcccgggcaagcgcaacggcgaagatgttgacctg
cgcgtggacgtcgacgatatcgatcacttcggcaaccgtcgtatccgccaagtcggcgag
ctgatccagaaccagctgcgtaccggtctgagccgtatggagcgcgtggtgcgcgagcgt
atgaccactcaggacgccgaggccatcaccccgcagtccctgatcaacatccgcccggtg
aacgccaccatcaaggagttcttcggcacttcccagctctcccagttcatggatcagaac
aacccgctgtccggtgtgacgaacaagcgtcgtctttccgcactgggccccggcggtctg
tcccgcgaccgcgcctccatggaagtgcgcgacgtgcacccgtcccacttcggccgtatg
tgcccgatcgagtctcctgaaggcccgaacatcggtctgatcggctccctagcaaccttc
ggccgcgtcaacccgttcggcttcatcgagaccccgtaccgcaaggtcgtcaacggccat
gtgaccgacgaggtcgagtacatgaccgctgaccgcgatcttgaccacgtcatcgcccag
gccaaccaggagctcgacgagaacggcaacttcgtctccaagtccgcccttgcccgagtc
ggcgaggaagaggcggtcgatgtgccggtgagctccgtggattacatggacgtctccccg
cgtcagatggtctccctcggtgcctccctgatcccgttcctggagcatgatgagggccac
cgtgcactgatgggtaccaacatgcagcgtcaggccgtgccgctgatcgaatccgagcgc
ccgctggtgggcaccggctccgaatggcgcgccgccaacgactccggcgacgtcatcaag
tccgagaaggacggtgtggtcacctacgtgtccgccgacctgatccgcgtgatgaacgac
gacggcaccaccagctcctacaagctggccaagttccagcgctccaaccagaccacctgc
tacaaccagcgtccgatcattcatgatggcgagcgtgtggaagccggctcggtgctggcc
gatggtcctgccatccagaagggcgacctggccctgggcaagaacctgctcatcgccttc
atgccttggaacggctacaactacgaggatgctgtgatcatctcccagcgcctcgtgcag
gacgacaccctctcctccatccacatcgaggagtacgagatcgacgcccgcgaaaccaag
ctgggcgccgaagagatcacccgcgatctgccgaacgtcggcgaggacgctgtggccaac
ctcgacgagcgcggcatcatccgcatcggcgccgaggtcgaggccggcgacatcctggtc
ggtaaggtcaccccgaagggtgagaccgagctgaccccggaggagcgcctgctgcgcgcc
atcttcggcgagaagtcccgcgaggtgcgcgacacctccctgcgtgtgcctcacggcgag
accggtaccgtcatcggcgtcaaggagatcacccgcgaggatgccgaggaggacggtgac
gagctgcccaacggcgtcaaccagatgatccgcgtctacatcgcccagcaccgtaagatc
acggtgggcgacaagctctccggccgccacggcaacaagggctgcatctcccgcatcctg
ccggaagaggacatgccgttcctggctgacggtactccggtcgacatcatgttgaacccg
ctgggtgtgccttcccgaatgaacctcggtcaggtgctcgaactgcaccttggctggatc
gcccactccggttgggatatctcccttgacccgaacatggaagccgagtggaagaagctg
gttccgtccggtgccgagaaggccgagccgaacaccccggtcgccaccccggtgttcgac
ggtgtcaagcccgaggtcctgaagggcctgctgtccaccacgctgccgaaccgtgacggc
gaccgtctggtcggccccgacggcaaggccaccctgttcgatggccgtaccggtgagccg
tacaccaagccgatttccgttggctacatgtacatgttgaagctgcaccacctggtcgac
gacaagattcacgctcgttccaccggcccgtactccatgatcacccagcagccgctcggt
ggtaaggcccagttcggtggccagcgcttcggcgagatggaggtgtgggcccttgaggcc
tacggtgccgcctacacgctgcacgagatgatgaccaccaagtccgatgacgtcgacggc
cgcgtgcgcgtctacggtgccatcgtcaagggcgataacctgcctccggccggcatccct
gagtcgttcaaggtgctcctgaaggaaatgcagtccctgtccctgaacgtcgaagtgctc
aacgccgaaggcgtggccatcgacatgaaggatgaggatgacgatccggccagctccgct
gacgacctcggcttcaacattggcgcccgccccgacgcggccgccaaggaagaccagaag
gccgaagagcccgaataccagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (8)   
   Pfam (8)   
All databases (20)   

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