KEGG   Brevibacterium linens BS258: A2T55_12390
Entry
A2T55_12390       CDS       T04319                                 
Name
(GenBank) DNA ligase (NAD(+)) LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
bly  Brevibacterium linens BS258
Pathway
bly03030  DNA replication
bly03410  Base excision repair
bly03420  Nucleotide excision repair
bly03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:bly00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    A2T55_12390
   03410 Base excision repair
    A2T55_12390
   03420 Nucleotide excision repair
    A2T55_12390
   03430 Mismatch repair
    A2T55_12390
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:bly03032]
    A2T55_12390
   03400 DNA repair and recombination proteins [BR:bly03400]
    A2T55_12390
Enzymes [BR:bly01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     A2T55_12390
DNA replication proteins [BR:bly03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     A2T55_12390
DNA repair and recombination proteins [BR:bly03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     A2T55_12390
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     A2T55_12390
   MMR (mismatch excision repair)
    DNA ligase
     A2T55_12390
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      A2T55_12390
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 PTCB-BRCT HHH DNA_pol_lambd_f RNA_lig_T4_1 BRCT_2
Other DBs
NCBI-ProteinID: AMT94471
UniProt: A0A142NR39
Position
complement(2798399..2800609)
AA seq 736 aa
MTTTPENADSSAESSAPDLQNADLSDAATRAQVHAQLTEKIEELRAAYYQDSLLVSDAEY
DELVHRLEDLEAKFPELVTDSSPTQTVGGVVDTSTFDPVEHIGPMYSLDNVFDYDELRAW
YERVRSATSVKSKFLCELKIDGLAVNLLYRNGELVRAATRGDGRIGEDITANVRTISDIP
HHLNTEHPPAEVEIRGEVFFPVEEFAELNASLVAEGKAPFANPRNSAAGSLRQKDPAVTA
RRPLHMLVHGIAVWTAADDSHPEPAHQSEVYEQFRSWGLPISDYFKVLDTVDEIEDFITY
YGEHRHDVTHEIDGIVIKIDDIAVQETLGYTSRAPRWATAFKYPPEEVTTKLIDIQVQVG
RTGRVTPFAVMEPVTVAGSTVERATLHNGYEVKRKGVLIGDTVTLRKAGDVIPEVLGPVA
ALRDGSEHEFVMPTHCPSCGTELGEQKEGDKDLRCPNSRSCPAQLANRIFYLASRAAFDI
EALGEEAALALTAPAEPETPPLTSEAFLFDLTPEDLADVKIWRNKKSKGVETGERELVPY
FYTRGTAKKQSAPSANTKKLFDELEKAKDQDLWRVLVALSIRHVGPTAARTLAAKFRTLD
AIREASLEELSAVESIGPTIAQSIRAWFEIDWHVEIVETWAAAGVRMEDDEVEAAEQTLE
GLTIVATGSLSSFTRDGIKEAILGAGGKAAGSVSKKTDYVVAGENAGSKLEKAESLGVPV
LDEDQFRVLLETGSLD
NT seq 2211 nt   +upstreamnt  +downstreamnt
atgaccacgacaccggagaacgccgactcatcggccgaatcgtcggcgcccgatctgcag
aacgcagacctgtcggatgcggccacccgtgcccaggtccatgctcagctgaccgagaag
atcgaggagctgcgggccgcctactaccaggactccctgctggtctccgatgccgagtac
gacgagctcgtccatcgcctcgaagacctcgaagcgaagttccccgaactcgtcaccgac
tcctcaccgacgcagaccgtcggcggcgtcgtcgacacctcgaccttcgacccagtcgaa
cacatcggtccgatgtacagcctcgacaacgtcttcgactatgacgaactgcgggcctgg
tacgaacgggtgcggtcggccacctcggtgaagtcgaagttcctgtgcgaactcaagatc
gacggtctcgcggtcaacctgctctaccgcaacggagaacttgtgcgggccgcgacccgc
ggcgacgggcgcatcggtgaggacatcacggcgaacgtgcgtacgatctccgatatcccg
caccacctcaacaccgagcatccgccggccgaagtcgagatccgcggtgaggtgttcttc
ccagtcgaggaattcgccgagctcaacgcctccctcgtcgccgagggcaaggcccccttc
gcgaacccgcggaactccgcggcaggctcgctgcgacagaaggacccggccgtcacggca
cgccggcccctgcatatgctcgtccacggaatcgccgtgtggaccgctgccgacgattcg
catcccgaaccggcccaccagtccgaggtctacgaacagttccggtcctggggactgccg
atcagcgactacttcaaagtcctcgacaccgtcgacgagatcgaggacttcatcacctac
tacggcgaacaccgccacgacgtcacccacgagatcgacggaatcgtcatcaagatcgac
gatatcgccgtgcaggagacactcggctacacctcacgcgcaccgaggtgggcgaccgcc
ttcaaatacccgcccgaagaggtcacgacgaagctcatcgacatccaggtgcaggtgggc
cggaccggacgagtgaccccgttcgccgttatggaaccggtgaccgtggccggatcgacc
gttgaacgggcgaccctgcacaacgggtacgaggtcaaacgcaagggcgtgctcatcggc
gacaccgtcaccctgcgcaaggccggagacgtcatccccgaagtgctcggcccggtggcc
gcgctgcgggacggatccgaacacgagttcgtcatgcccacccactgcccgtcctgcggg
accgagctcggtgagcagaaggaaggcgacaaggacctccggtgcccgaattcgcgatcg
tgcccggcacagctggccaaccgaatcttctacctcgcctcccgcgcggccttcgacatc
gaagccctcggcgaggaggccgcgctggcgctgacggccccggccgaaccggagacgccc
ccgctgacctcggaagcattcctcttcgacctgactcccgaggatctggccgacgtcaag
atctggcggaacaaaaagtccaagggcgtggagaccggtgagcgcgagctcgtgccctac
ttctatacccgcggaaccgcgaagaagcagagcgccccgagcgcgaacacgaagaagctc
ttcgacgaactggagaaggcgaaggatcaggatctgtggcgggtgctcgtcgccttgtcg
atccgccatgtcggaccgaccgccgcacggaccctggccgcgaagttccgcaccctcgat
gccatccgtgaggccagcctcgaggagctctccgccgtcgaaagcatcgggccgacgatc
gcgcagagtatacgcgcatggttcgagatcgactggcacgtcgagatcgtcgagacctgg
gcggccgccggagtgcggatggaagacgacgaggtcgaggcagccgagcagaccctcgaa
gggctgacgatcgtggccaccggctcgctgagttcgttcacccgcgacgggatcaaggag
gcgatcctcggtgccggcggtaaggccgcaggctcggtgtcgaagaagaccgactatgtc
gtcgccggtgagaatgctggatcgaagttggagaaggctgagtcgctgggcgtgcccgtg
ctcgacgaagaccagttcagggtactgctggagaccggcagcctcgactga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (41)   

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