KEGG   Burkholderia mallei 6: DM78_1320
Entry
DM78_1320         CDS       T03489                                 
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
  KO
K03666  host factor-I protein
Organism
bmae  Burkholderia mallei 6
Pathway
bmae02024  Quorum sensing
bmae03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bmae00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DM78_1320 (hfq)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    DM78_1320 (hfq)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bmae03019]
    DM78_1320 (hfq)
   03036 Chromosome and associated proteins [BR:bmae03036]
    DM78_1320 (hfq)
Messenger RNA biogenesis [BR:bmae03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   Other RNA degradation factors
    Chaperones
     DM78_1320 (hfq)
Chromosome and associated proteins [BR:bmae03036]
 Prokaryotic type
  Nucleoid associated proteins
   Other nucleoid associated proteins
    DM78_1320 (hfq)
SSDB
Motif
Pfam: Hfq LSM
Other DBs
NCBI-ProteinID: AIO58875
Position
1:complement(1424763..1425374)
AA seq 203 aa
MANPAESHPQNDFINAARKERKRVEIYLVNGIRLTGCIESFDQYLVMLRTPVGLQGIYKR
AISTIQLDTGGSRPGGRGPRAGGAHGGGGRPGGREGGGHGPYGSHGGSREPRGDGGGYGA
RESRGDGGYGSRESRGDGGYGSREPRGDGGYGAREPREPREPRESYGAPQEGASTPSGTQ
ERNGNGPVIVTRRRRSLGPTDGQ
NT seq 612 nt   +upstreamnt  +downstreamnt
atggccaatcctgcagaatcccatccgcaaaacgacttcatcaatgccgcgcgcaaggaa
cgcaagcgcgtcgaaatttatctcgtcaacggtattcgactgacgggttgcatcgagtcg
ttcgaccagtatctggtgatgctgcgcacgcccgtcggcctgcaaggcatctataaacgc
gccatctcgacgatccagctcgacacgggcggctcccgtccgggcggacgcggcccgcgc
gcgggcggcgcccacggcggcggcggacgccccggcggacgcgaaggcggcggtcatggc
ccgtacggctcgcacggcggctcgcgcgaaccccgcggcgacggcggcggctatggcgct
cgcgaatcgcgcggcgacggcggttatggctcccgcgaatcgcgcggcgacggcggctac
ggttcccgcgaaccgcgtggcgacggcggctatggcgcgcgcgagccgcgtgaaccgcgc
gagccccgcgagtcttacggcgcgccgcaagaaggcgcatcgacgccgtccggcacgcag
gaacgcaacggcaacggcccggtgatcgtcacgcgccgtcgccgttcgctcggcccgacc
gacggccaataa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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