KEGG   Bombyx mandarina (wild silkworm): 114249034
Entry
114249034         CDS       T05882                                 
Name
(RefSeq) general transcription factor IIH subunit 4
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
bman  Bombyx mandarina (wild silkworm)
Pathway
bman03022  Basal transcription factors
bman03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:bman00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    114249034
  09124 Replication and repair
   03420 Nucleotide excision repair
    114249034
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bman03021]
    114249034
   03400 DNA repair and recombination proteins [BR:bman03400]
    114249034
Transcription machinery [BR:bman03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     114249034
DNA repair and recombination proteins [BR:bman03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     114249034
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3
Other DBs
NCBI-GeneID: 114249034
NCBI-ProteinID: XP_028038289
UniProt: A0A6J2KDD8
Position
Unknown
AA seq 475 aa
MSESSKSKSLNLNPSPTLQCKDLHEYLKSRSPQFLETLYNYPTICLAVYRELPELARHFV
IRLLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKK
NLKVSLLGGGRAWSMSSSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQTEGISADAV
RILLHAGLMTRDAEDGSAVITRAGFQFLLLSTPKQVWLFLQHYLHTAERRSLSAAECLAF
LYQLSFSTLGKDYSTEGMSNNMLVFLQHLREFGLVYQRKRKAGRFYPTRLALNILRVRCA
APLEAAAGARGHLVLETNYRVYGYTSSDLQVALLGLFTELIYRFPNVVVGVVSRESVRQA
LRGGITAEQIIHYLEQHAHPQMLKSETGGIRSASMLPPTVVDQIRLWESERNRCVYTEGV
VYNQFLSQADFVVLRDHARAAGVLSWQHERARTMVVTRAGHDDVKKFWKRYSKNS
NT seq 1428 nt   +upstreamnt  +downstreamnt
atgtcagagtcttctaaatcgaagtctttaaatttgaatccttcgcctacactacaatgc
aaagatcttcacgaatatcttaagtcgcggtctccgcagtttctagagactctttacaat
taccccactatatgtctagctgtatatcgcgaattaccagagctagcacgtcacttcgta
atccgcttgctgttcgttgagcagccagtcccacaggcagttgtcacatcctgggtctcg
cagacatatgccaaagaacaagcaaaagcatgcactacactgtcagagctctccgtgtgg
caggaggcgcccataccggggggcatgccgggctggatgctcgcacagtcgtttaaaaag
aacctcaaagtgtcattgcttgggggaggcagggcgtggagcatgtcgtcgtcgctggag
ccggacgggaaggcccgggacgtgtcgttcctggacgcgtacgcgctggagcgctgggag
tgcgtgctgcactacatggtgggcagcgcgcagaccgagggcatcagcgccgacgccgtc
cgcatactgctgcacgccggcctcatgaccagagacgcagaagacgggtccgccgtcatc
actcgcgccggcttccagtttctgctcctgagtacacccaagcaggtgtggctgttcctg
cagcactacctgcacacggccgagcgccgcagcctcagcgccgccgagtgcctggccttc
ctctaccagctcagcttcagcaccctggggaaggactacagcacggagggcatgagcaac
aacatgctggtgttcctgcagcacctgcgggagttcggtctcgtctaccagaggaagcgc
aaggcgggccgcttctaccccacccgcctcgcgctcaacatcctgcgcgtgcgctgcgcc
gcgccgctcgaggccgccgccggcgcgcgcggacacctcgtgctggagaccaactaccgc
gtgtacggctacacctcctccgacctgcaggtcgcgctgctcggcctcttcacggagctc
atctacaggttccccaacgtggtggtgggcgtggtgagccgggagtccgtccgccaggcg
ctgcgcggcggcatcacggccgagcagatcatccactacctggagcagcacgcgcacccg
cagatgctgaagtcagagacgggcggcatccggtcggcgtcgatgctgcctcccaccgtg
gtggaccagatccgcctgtgggagtccgagaggaaccgctgcgtctacacggagggggtc
gtctacaaccagttcctgtcgcaggccgacttcgtggtgctgcgggaccacgcccgcgcg
gccggcgtgctgagctggcagcacgagcgcgcgcggaccatggtggtgacccgggccggg
cacgacgacgtcaagaagttctggaagcgctactccaagaacagctag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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