KEGG   Bermanella marisrubri: HF888_13190
Entry
HF888_13190       CDS       T06527                                 
Name
(GenBank) DEAD/DEAH box helicase
  KO
K05592  ATP-dependent RNA helicase DeaD [EC:3.6.4.13]
Organism
bmar  Bermanella marisrubri
Pathway
bmar03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bmar00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    HF888_13190
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bmar03019]
    HF888_13190
   03009 Ribosome biogenesis [BR:bmar03009]
    HF888_13190
Messenger RNA biogenesis [BR:bmar03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     HF888_13190
Ribosome biogenesis [BR:bmar03009]
 Prokaryotic type
  rRNA helicases
   HF888_13190
SSDB
Motif
Pfam: DEAD Helicase_C DbpA ResIII CMS1 UvrD-helicase Sacchrp_dh_NADP MGS AAA_19 AAA_22
Other DBs
NCBI-ProteinID: QIZ85117
Position
complement(2834669..2836513)
AA seq 614 aa
MSESSTGFASLGLPFNLLRAIEEQGYEQPSPIQEQSIPHLLEGKDVLGLAQTGTGKTAAF
TLPLLARTQNEVREPQVLVLAPTRELAQQVAMAVESYSKHESNVKVASIYGGSDFGSQFR
ALKQGPQWVVGTPGRVMDHIRRGTLKLEGIRAVVLDEADEMLRMGFIDDVDWVLDQVPEK
RQIALFSATMPKQIKAVAEKHLREPTEIRIKSKTATNESIEQKYWLVKGVDKNQALLRIC
ETSEFDAMMVFVRTKQATEEVADYMRSHGLRCEALNGDVAQAQRERAVDRLKKGQVDMLV
ATDVAARGLDVERISHVVNYDIPYDAESYVHRIGRTGRAGRSGEAILFVRPRERRMLSTI
ERVTRKKIQQIELPTAKEVNAKRRDQFKVRALEHIEGRDIEIFKKIASEILAEQPALDPI
ELAAAFAQMSQGNKPLFMDESEPRFKPETDRGERGERKERRNNSGREERKPIELEAMPLK
DFPDVEMRRYRLAVGYKDGVKPGNIVGAIANEADIESKFIGHIEIYDTFASVDLPSGMPE
ETLTHLKKARVCGRPINIEPLKNRGAGGGQKPRRNAKGGNKGKKPQGERGQNKGGAKSGK
PKRTGDRKPRMSAL
NT seq 1845 nt   +upstreamnt  +downstreamnt
atgtcagaatcatccactggctttgccagtcttggtcttccttttaatttattgcgtgct
atcgaagagcaaggttatgaacaacctagcccgatccaagagcagagtattcctcacctt
ttggaaggtaaagatgtattaggtttagcgcaaacgggtaccggtaaaacagcagccttt
accctaccattattggctcgcactcagaatgaagtgcgcgagccgcaggttttagtcttg
gcccctacccgcgaattagcccagcaagtagcgatggcggtggagtcttacagcaagcat
gaatcgaatgtaaaagtcgctagcatttatggcggtagcgattttggttctcaattccgt
gcacttaagcagggtccacaatgggtagtgggtacgcccggtcgcgttatggatcatatt
cgtcgcggtactttgaagcttgaaggcattcgtgccgtagtgcttgatgaagctgacgaa
atgttgcgtatgggcttcattgatgatgtggattgggtattggatcaagtacctgaaaag
cgtcagatcgcactatttagtgccaccatgcctaagcaaattaaagcggttgccgaaaag
catttgcgtgaaccgactgagattcgaattaaaagcaaaaccgcgaccaatgagtctatc
gagcagaaatattggctagtaaaaggtgtcgataagaaccaagcattgttgcgcatctgt
gagaccagcgaattcgacgccatgatggtgtttgttcgtactaagcaagccactgaagag
gtagcagattatatgcgctctcatggtttacgctgtgaagcattaaacggtgatgtggct
caagcacagcgagagcgtgcggttgatcgtctgaagaagggtcaagtggacatgctagta
gcaacggacgtggctgcacgtggtcttgacgtagagcgtatcagtcacgtggtgaactat
gatattccttatgatgcagagtcgtacgtacaccgtatcggccgtactggtcgtgcaggt
cgttcaggtgaagcgattttgtttgtgcgtccccgtgagcgccgtatgctgagcaccatc
gagcgtgttacacgtaagaagattcagcaaattgaattgcctacggcgaaagaagtgaac
gctaaacgtcgcgatcaatttaaagtgcgagcgcttgaacacattgaaggtcgtgatata
gagatctttaaaaagattgccagtgaaattttggctgagcaaccagcattagatccgatt
gaattggcagctgcctttgcgcaaatgtcacaaggaaacaagccattatttatggatgaa
tcggaaccacgctttaaaccagaaaccgatcgtggtgagcgcggcgaacgaaaagagcgt
cgtaataacagtggccgagaagagcgtaagcctattgaattggaagccatgccgttgaaa
gatttcccggatgtggaaatgcgtcgctatcgactagcggttggctataaagacggggtt
aagccaggcaatatcgttggcgccatagccaacgaagcggacattgaaagcaagttcatt
ggccatattgagatttatgatacattcgcatcggtcgatttaccatcgggcatgcctgaa
gagacattgacacatctgaagaaagcacgtgtttgtggtcgtccgattaatatcgaacca
ttgaagaaccgtggtgctggcggtggtcaaaagccacgccgcaatgcgaaaggtggcaac
aaaggtaagaagcctcaaggcgagcgtggtcagaataagggcggtgctaagtcaggtaag
cctaagcgtaccggtgatcgcaagcctcgcatgagtgccctgtaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (2)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
Protein domain (10)   
   Pfam (10)   
All databases (18)   

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