KEGG T00479: BMA10247

Burkholderia mallei NCTC 10247: BMA10247_1021

Entry

BMA10247_1021     CDS       T00479

Symbol

rnr

Name

(GenBank) ribonuclease R

K12573

ribonuclease R [EC:3.1.13.1]

Organism

bmn Burkholderia mallei NCTC 10247

Pathway

bmn03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:bmn00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BMA10247_1021 (rnr)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bmn03019]
    BMA10247_1021 (rnr)
   03016 Transfer RNA biogenesis [BR:bmn03016]
    BMA10247_1021 (rnr)
Enzymes [BR:bmn01000]
3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     BMA10247_1021 (rnr)
Messenger RNA biogenesis [BR:bmn03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BMA10247_1021 (rnr)
Transfer RNA biogenesis [BR:bmn03016]
Prokaryotic type
  tRNA degradation factors
   BMA10247_1021 (rnr)

SSDB

Motif

Pfam:

RNB CSD2 OB_RNB S1 OB_Dis3 RNase_II_C_S1 HTH_12 CSD RcsD_ABL

Other DBs

NCBI-ProteinID:

ABO04831

Position

I:complement(1009940..1012456)

AA seq 838 aa
MSGAPVRLRLPRSRKPNATRKIIDKPLSKYPYPIPSREEILGVLRTSDAPLAANDIAEAL
SIKRQEREGFFRRVAAMERDGQIRLDKRGHYQLTHPSNFVAGRVQGHRDGYGFVIRDDGQ
DDLFLPNAEMQKVMHNDRVLARIVGYDRRGRPEGHVVEVTERANKRVIGRLLNENGALIV
APEDKRISHDILVTQNAKKAKVGQVVVVELTDFPSRHSQPLGRVCEVLGDIDDPGMEIEI
AVRKYGVPHEFGAQALGEAAALPDKVRPADLRYRVDLRDVPLVTIDGEDARDFDDAVYCE
PAAVGRGEGFRLIVAIADVSHYVQPGSPLDADAVERSTSVYFPRRVIPMLPEKLSNGLCS
LNPQVDRCVLACDMIINARGDIKAYQFYPAVIHSAARLTYTEVAAVLSNTKGPEAARRAE
LMPHLQHLYGVYKALFVARQKRGAIDFDTTETYIVCNAQGKIEQILPRQRNDAHRLIEEC
MLAANVCAADFLKRNKHPGLYRVHAGPTPEKLENLRAFLRDMGLTLGGGDTPHASDYAAL
MAHIRDRPDAQMLQPMLLRSMQQAVYSPDNIGHFGLAYDAYAHFTSPIRRYPDLLTHRAI
YAILSGKKYTPKSPEGVELNTALSPRARAMQREDDEARGRARSNAAIWEELGLHCSSNER
RADEASRDVEAWLKCYFMRDKLGEEYGGMVNGVTSFGIFVQLDALFIEGLVHVTELGADY
FQYDEVKNELRGERTGIRYRLSDRVRVQVSRVDLDARKIDFRLVRETPVKAPRPASAVAA
EAGAGGPRVRALPPAEGAARRKKAASAPSAAVKEARAARKKGAASKPAAKKARSRKKY

NT seq 2517 nt +upstreamnt +downstreamnt
atgagcggcgcgcccgttcggctccgcttgccgcggtcgcgcaagccaaacgcaacgaga
aaaatcatcgacaagcccttgagcaagtatccgtatcccatcccgagccgcgaagagatt
ctcggcgtgctgcgcacgagcgacgcgccgcttgcggcgaacgacatcgccgaagcgctg
tcgatcaagcgtcaggagcgcgaaggatttttccggcgcgtcgccgcgatggagcgcgac
ggccagatccgtctcgacaagcgcggtcattatcagctgacgcatccgtccaacttcgtc
gcgggccgcgtgcaaggccaccgcgacggctacggcttcgtgattcgcgacgacgggcag
gatgatctgttcctgccgaacgccgagatgcaaaaggtcatgcacaacgaccgcgtgctg
gcgcggatcgtcggctacgatcggcgcggccggccggaagggcacgtcgtcgaggtgacc
gagcgggcgaacaagcgcgtgatcgggcgcctcctgaacgagaacggcgcgctcatcgtc
gcgcccgaggacaagcggatcagtcacgacatcctcgtcacgcagaacgcgaagaaggcg
aaggtcgggcaggtcgtcgtcgtcgagctcaccgatttcccgagccgtcattcgcagccg
ctcggccgcgtctgcgaggtgctcggcgatatcgacgatcccggcatggagatcgagatc
gcggtgcgcaagtacggcgtgccgcacgaattcggcgcgcaagcgctcggcgaggccgcg
gcgctgccggacaaggtgcggcccgcggatctgcgctaccgcgtcgacttgcgcgacgtg
ccgctcgtcacgatcgacggcgaggacgcgcgcgacttcgacgacgccgtgtactgcgag
cccgccgcggtcggccgcggcgagggcttccggctcatcgtcgcgatcgcggacgtgtcg
cactacgtgcagccaggcagcccgctcgacgccgacgcggtcgaacgcagcacgtcggtc
tatttcccgcgccgggtgattccgatgctgccggagaagctgtcgaacgggctctgctcg
ctgaatccgcaggtcgatcgctgcgtgctcgcgtgcgacatgatcatcaacgcgcgtggc
gacatcaaggcgtatcagttctatccggccgtgatccactcggccgcgcggctcacgtac
accgaagtggccgcggtgctctcgaacacgaaggggccggaggccgcgcgccgcgccgag
ctgatgccgcacctgcagcacctgtacggcgtctacaaggcgctcttcgtcgcgcggcag
aagcgcggcgcgatcgacttcgacacgaccgagacgtacatcgtctgcaacgcacagggc
aagatcgagcagattctgccgcgccagcgtaacgacgcgcatcggctgatcgaggaatgc
atgcttgccgcgaacgtctgcgcggccgatttcctcaagcgcaacaagcacccgggcctc
taccgcgtgcacgcggggccgacgcccgaaaagctcgagaatctgcgcgcgttcctgcgc
gacatggggctcacgctgggcggcggcgacacgccgcatgcgagcgattacgcggcgctg
atggcgcacatccgcgaccggcccgacgcgcagatgctgcagccgatgctgctgcgctcg
atgcagcaggcggtctacagtccggacaacatcggccacttcggtctcgcgtacgacgcg
tacgcgcacttcacgagcccgattcgccgctatcccgatctgctcacgcaccgcgcgatc
tacgcgatcctgtccggcaagaagtacacgccgaagtcgccggaaggcgtcgagctgaac
accgcgctgtcgccgcgcgcgcgcgcgatgcagcgcgaggacgacgaggcgcgcggccgc
gcgcggtcgaacgcggcgatctgggaggagctcgggctgcactgttcgtccaacgagcgg
cgcgcggacgaagcgtcgcgcgacgtcgaggcatggctcaagtgctatttcatgcgcgac
aagctcggcgaggaatacggcgggatggtgaacggcgtcacgtcgttcggcatcttcgtg
cagctcgatgcgcttttcatcgaaggcctcgtgcatgtgaccgagctcggcgccgattat
tttcagtacgacgaagtcaagaacgaactgcgcggcgagcgcacgggcattcgctaccgg
ctgtccgaccgcgtgcgcgtgcaggtgagccgcgtcgatctcgatgcgcgcaagatcgat
ttccgcctcgtgcgcgagacgcccgtgaaggcgccgcgcccggcatcggcggtggcggcc
gaagcgggcgcgggcgggccgcgtgtgcgcgcgctgccgcccgccgaaggcgccgcgcga
cgcaagaaggccgcgagcgcgccgagcgcggcggtgaaggaggcccgggcggcccgcaag
aagggcgccgcgtcgaagccggccgcgaagaaggcgcgttcgcgcaagaagtactga

All links

Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (19)   

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