KEGG   Borrelia miyamotoi LB-2001: I871_01215
Entry
I871_01215        CDS       T02797                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
bmo  Borrelia miyamotoi LB-2001
Pathway
bmo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bmo00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    I871_01215
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bmo03021]
    I871_01215
   03019 Messenger RNA biogenesis [BR:bmo03019]
    I871_01215
Transcription machinery [BR:bmo03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     I871_01215
Messenger RNA biogenesis [BR:bmo03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     I871_01215
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab NACHT AAA Spore_III_AA DUF1269 AAA_18 AAA_22 Rho_N AAA_25 OB_RNB DUF5442
Other DBs
NCBI-ProteinID: AGT27222
Position
complement(233900..235444)
AA seq 514 aa
MDKKCEEFDLEDEMKRLNSSKESKTEDHAKKKIVKVVTKKESISGGLKKSNTDKLRESNG
ILSNFDYDMPASDLESSIKTFEQSNVINFLGGKDFIVIDSLYDKPITEIRKIVEGLGTNH
TIAVTMKKTELIFLLVKILTEHNINVLFTGVLDVLSDGYGFLRTASNSYLSGGNDVYVSP
SQIRLFNLRTGDILYGQIRSPRDGERFFAMIKIKSINDQDPTFAQNRIPFDNLTPLYPSS
KLDLEYENCNISTRLINLFAPIGKGQRALIVSPPKAGKTTLLQKIANAITTNYSDIVLMI
LLIDERPEEVTDMIRGVKGEVIASNFDEQASRHVQVAEMVIEKAKRLVENKKDVVILLDS
ITRLARAYNQTMPTSGKILSGGVDSNALHKPKRFFGSARNIEEGGSLTIIATALVDTGSK
MDEVIFEEFKSTGNMELILDRSLADRRLFPAINIKKSGTRKEELLLSEEERSKILLIRKI
LSGVDDYEGVEALVEKMKKSKNNEIFLKTMSNGD
NT seq 1545 nt   +upstreamnt  +downstreamnt
atggataaaaaatgtgaggagtttgatttagaggatgaaatgaagcgtttaaattcttct
aaggaatcaaaaactgaggatcatgctaagaaaaagatagttaaagttgtaactaaaaaa
gaatctatttctggcggacttaaaaagtctaatactgataaattaagagaatctaatgga
atcttatcaaattttgattatgatatgcccgcttctgatttagaaagcagtattaagact
tttgaacaaagcaatgttattaattttttaggtggtaaagattttatagtgattgatagt
ctttatgataaaccaattactgaaatcaggaagattgttgagggtcttggtactaatcat
actattgcagtaacaatgaagaagacggaattaatatttttgcttgttaagatattaacc
gaacataatattaatgttttgtttactggcgttcttgatgtattaagcgatggatatggc
tttttgcgtacagcatctaattcttatctatcaggaggtaatgatgtttatgtttctccg
tctcaaattagactttttaatttaaggacaggtgatattttatatggacaaattaggtct
ccaagagatggtgagagattttttgcaatgattaaaattaaaagcattaatgaccaggac
cctacatttgcacagaataggataccttttgataatttaacacctttgtatcctagttct
aagttggatcttgaatatgaaaattgtaatatttccacaagacttattaacctttttgca
cctattggaaaaggacaaagagcattaatagtctctcctccaaaggctggaaagactact
ttgcttcaaaaaatagctaatgcaattacgactaattattcagacattgttttaatgatt
ttactcatagatgagagacctgaagaggttactgacatgattcgtggtgttaagggcgag
gttattgcatctaattttgatgagcaagctagcaggcacgtgcaggttgcagaaatggtt
attgagaaagcaaaaagacttgttgaaaataaaaaagatgttgttattcttttagattct
attacaagacttgcaagggcttataatcaaactatgccaacttctggcaagatactttct
ggaggagttgattctaatgctttacataagccaaaaagattttttggttctgctagaaat
attgaggaaggtggaagtcttactattatagctacagctttagttgatactggaagtaag
atggatgaagttatatttgaggaatttaaaagtactggtaacatggagttgattcttgac
agaagtttggcagatagaaggctttttcctgctatcaatattaagaaatcaggaacaaga
aaagaagagttactcttgagtgaagaagagcgatctaagattttgcttattagaaaaatc
ttaagtggtgttgatgattatgaaggagttgaggctttagttgagaagatgaaaaaaagt
aaaaataatgagattttcctaaagaccatgagtaatggggactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (12)   
   Pfam (12)   
All databases (20)   

Download RDF
DBGET integrated database retrieval system