KEGG   Halobacteriovorax marinus: BMS_0958
Entry
BMS_0958          CDS       T01659                                 
Symbol
exoA
Name
(GenBank) putative exodeoxyribonuclease
  KO
K01142  exodeoxyribonuclease III [EC:3.1.11.2]
Organism
bmx  Halobacteriovorax marinus
Pathway
bmx03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:bmx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    BMS_0958 (exoA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bmx03400]
    BMS_0958 (exoA)
Enzymes [BR:bmx01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.11  Exodeoxyribonucleases producing 5'-phosphomonoesters
    3.1.11.2  exodeoxyribonuclease III
     BMS_0958 (exoA)
DNA repair and recombination proteins [BR:bmx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    AP endonucleases
     BMS_0958 (exoA)
SSDB
Motif
Pfam: Exo_endo_phos Exo_endo_phos_2 Amastin
Other DBs
NCBI-ProteinID: CBW25845
UniProt: E1WXN9
Position
complement(934395..935165)
AA seq 256 aa
MKIYSWNVAGIRACEKKGLYDWYLEELAEVYCFQETKALPEQLNDQLVNPKSHSAIYAPA
VKKGYSGVSTWVKSGIEHKHTIGLGIEEFDNEGRTIITEFDNFFLFNCYFPNGQRDHARV
PYKMSYCKAIEEKAQELHQQFKKDIIITGDYNTAHHPIDLANPKTNTKSTGFLPLEREWM
DHFEEIGYVDIFRHFTPEENGHYTWWTYRSNCRERNIGWRIDYFWTNKDMLKNIKGCSHH
TDILGSDHCPISLELN
NT seq 771 nt   +upstreamnt  +downstreamnt
atgaagatatattcatggaatgtggccggtatcagggcctgtgagaaaaaaggtctctat
gattggtacctagaagaactagcagaggtttactgctttcaggaaacgaaggcccttcct
gagcaacttaacgatcaacttgtaaacccaaagtcccacagtgccatttatgcgccggcg
gtaaaaaagggctattcaggagtatcaacttgggtaaaaagtggaatcgaacacaagcat
actataggacttggtattgaagaatttgataatgagggaagaactattattacagagttt
gataacttctttctctttaattgctactttccaaatggtcagagagaccatgcgcgagtt
ccctataagatgagctactgcaaggccattgaagagaaggcgcaagaactacaccaacaa
tttaaaaaagatattattattacaggtgattacaatactgctcaccatcccattgatcta
gcgaatccaaaaaccaatacaaagtcgactggctttcttcccctagaaagagagtggatg
gatcactttgaggaaattggctatgtggatatctttcgccacttcactccagaggagaat
ggtcattacacttggtggacttatagatcaaattgtagagagagaaatattggctggaga
atagattacttttggaccaataaagacatgcttaaaaatattaaaggctgttcacaccac
acagatattcttggaagtgaccactgccctatttcccttgagctaaactag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (22)   
   KEGG ORTHOLOGY (1)   
   RefGene (19)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (32)   

Download RDF
DBGET integrated database retrieval system