KEGG   Halobacteriovorax marinus: BMS_1508
Entry
BMS_1508          CDS       T01659                                 
Symbol
pnpA
Name
(GenBank) putative polyribonucleotide nucleotidyltransferase
  KO
K00962  polyribonucleotide nucleotidyltransferase [EC:2.7.7.8]
Organism
bmx  Halobacteriovorax marinus
Pathway
bmx03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bmx00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BMS_1508 (pnpA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bmx03019]
    BMS_1508 (pnpA)
   03016 Transfer RNA biogenesis [BR:bmx03016]
    BMS_1508 (pnpA)
Enzymes [BR:bmx01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.8  polyribonucleotide nucleotidyltransferase
     BMS_1508 (pnpA)
Messenger RNA biogenesis [BR:bmx03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BMS_1508 (pnpA)
Transfer RNA biogenesis [BR:bmx03016]
 Prokaryotic type
  tRNA degradation factors
   BMS_1508 (pnpA)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C S1 KH_1 PNPase KH_2
Other DBs
NCBI-ProteinID: CBW26365
UniProt: E1X0D7
Position
1487881..1490010
AA seq 709 aa
MLNDKKVYSLNYGGKEVTVETGRLAKQADGSVLVSCNGTQVLVTVCSAHEVKDGQDFFPL
LVEYTEKFYSAGKFVGGFLKREGRPSTSETLNARLIDRPLRPLFPEGYMFDTVVSCNVLS
YSDEGDAEVLAGLGASAALTISDIPFNGPIGTCKVGRVDGKLVLNPSHSQWAESDLEIAV
AASADAILMVEGEAKVVPEKEVLEAIYFGHDNIKEYVKLMEQMRSEIGRPKREFVSAAAN
ETMMSKMRSDFASGARNCISIDDKMDRQRAVKALEKEVKNAMSEAPEAFGLTADDSFGKE
AYKGVDELLYEMMRGDILNEEKRIAGRGMTEVREIETEANLLEHVHGSSLFTRGETQVMA
AVTIGGKHGEKMEDSIRGTEFQKFYLHYNFPPFSVGEARGVRGVGRRELGHGNLAERAVK
AVMPSEEEFAYTTRVVCEVMESNGSSSMGSVCSASMALMDAGVPISNPVAGIAMGLITDG
ERFKVLTDILGDEDHLGDMDFKVAGTVDGITAIQMDIKITGLTREIVEKSIEQAREGRLH
ILGEMAKTISTKRAEFKDGVPRIVTVQIPVDKIGALIGPGGKNIKKLQEDFDVTVEITEE
GLVKVLGTDTDILNNCVASIDLQINGPEVGSIYEAVVVTIKEYGAFVDIIPGVSGLVHVS
ELSDERVKDVSEYLSEGDKVSVKVVEVDRMGRLKLSAKAVKPVEKKADK
NT seq 2130 nt   +upstreamnt  +downstreamnt
atgttaaacgataagaaagtttattcgttgaactatggtggcaaagaagtcactgttgaa
acgggtcgtcttgctaaacaagctgacggttcagttctagtatcatgtaatggaactcaa
gttcttgttacagtttgttctgctcacgaagtaaaagatgggcaagatttcttcccacta
cttgttgagtacactgagaagttttactctgcaggtaagtttgtaggtggattcttaaag
agagaaggtcgtccttcaacttctgaaacattaaacgcaagactaattgatagacctctt
agacctctattcccagaagggtatatgtttgacactgttgtttcatgtaacgttctttca
tactctgatgaaggtgatgctgaagttctagcaggtttaggtgcttctgctgcattaact
atttctgatattccattcaatggtccaatcggtacatgtaaagttggtagagtagatgga
aagcttgttcttaacccatctcactctcagtgggcagagtctgatcttgagatcgctgta
gctgcttccgctgatgccattcttatggttgaaggtgaagcgaaggtcgttcctgagaaa
gaagttcttgaagcgatttactttggtcacgacaatatcaaagaatacgttaagctcatg
gagcaaatgagaagtgaaattggtagaccaaagagagagtttgtctcagcggcagctaat
gaaacaatgatgagtaaaatgagaagtgacttcgctagtggagcgagaaactgtatttct
atcgatgataaaatggatagacaaagagctgttaaggcacttgagaaagaagttaagaat
gcaatgagcgaagcgcctgaggccttcggacttactgctgatgatagctttggaaaagaa
gcatacaaaggtgtagatgagcttctctatgaaatgatgagaggagatattctaaacgaa
gaaaagcgtattgctggaagaggaatgactgaagttagagagatcgaaactgaagcaaac
ctacttgagcacgtacacggttcttcacttttcactagaggtgaaactcaggttatggcc
gctgtaacaatcggtggtaagcacggtgagaagatggaagattctatcagaggaactgag
ttccaaaaattctacttacactataatttccctccattctctgttggtgaggcgagaggt
gtaagaggtgtaggacgtcgtgaacttggtcacggtaaccttgctgaaagagctgttaag
gcagttatgccatctgaagaagaatttgcttatacaacaagagtcgtatgtgaagttatg
gagtctaatggttcttcttcaatgggatctgtttgttctgcttcaatggcactaatggat
gctggtgttcctatttctaatccagttgcaggtattgcgatggggctaattactgacggt
gagagatttaaagttctaactgatatccttggtgacgaagatcaccttggtgatatggac
tttaaagttgcaggtacagttgacggtatcactgcaattcaaatggatattaagattaca
ggtcttactcgtgagatcgttgaaaaatctattgagcaagctagagaaggtagacttcat
attctaggtgagatggcgaagacaatctcaactaagagagctgagttcaaagatggtgta
ccaagaattgttactgttcaaatcccagttgataagatcggtgctcttattggtccaggt
ggtaagaatattaagaaacttcaagaagactttgatgttactgtggaaattacagaagaa
ggacttgttaaagttcttggaactgacactgatatcctcaataactgtgtagcttcaatc
gatcttcaaatcaatggtccagaagtaggatctatttacgaagctgttgttgttacaatc
aaagagtacggtgcattcgtagatattatccctggtgtttctggtcttgttcacgtttct
gagctttctgatgaaagagttaaagacgtaagcgagtacctaagtgaaggtgataaggtt
tcagtaaaagttgttgaagttgatagaatgggaagactcaagctatctgccaaagctgtg
aagccagtagagaagaaagctgataaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (54)   
   KEGG ORTHOLOGY (1)   
   RefGene (51)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (6)   
   Pfam (6)   
All databases (68)   

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