KEGG   Brassica napus (rape): 106359234
Entry
106359234         CDS       T04128                                 
Name
(RefSeq) THO complex subunit 2
  KO
K12879  THO complex subunit 2
Organism
bna  Brassica napus (rape)
Pathway
bna03013  Nucleocytoplasmic transport
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106359234
  09122 Translation
   03013 Nucleocytoplasmic transport
    106359234
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106359234
   03041 Spliceosome [BR:bna03041]
    106359234
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     106359234
Spliceosome [BR:bna03041]
 Complex C
  Other components
   EJC/TREX
    106359234
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106359234
SSDB
Motif
Pfam: Tho2 THOC2_N Thoc2
Other DBs
NCBI-GeneID: 106359234
NCBI-ProteinID: XP_048593930
Position
A8:18573390..18586621
AA seq 1802 aa
MSLPLLECKYVTEEFVREGKSGSYGSKLPSSVPMLRFLYELCWVLVRGELPIQSCKAVLE
KVKFLDDPSKEELASCFADVVTQIAQDLTMSGDHRSRLTKLAKWLVESQTVPQRIFQERC
EEEFLWEAEMVKIKAQDLKGKEVRLNTRLLYQQTKFNLLREESEGYAKLITLLCRGSAGS
SHNASAATMGIIKSLIGHFDLDPNRVFDIVLDCFELEQDYDTFLNLIPIFPKSHASQILG
FKFQYYQRLEVNSPVPSGLYKLTALLVKKNFISLESIYAHLLPKDEEVFEDYNTYSAKRF
EEANNIGKINLAATGKDLMEDEKQGDFKVDLYAALDMETEAVAERIPELENNQTLGLLDG
FLSVDDWKHANIMFERLAPLNPVAHNHICDGLFRLIEKRITHAYRIARQTRFQNSSSASS
EKIAHAANTSASKTCPDLKEVFQILVTVGPYLYRNTQLLQKICRLLRVYYLSSLDLVRSS
DGSSNQEGSADEIKHLKEARFRVEEALGTCLLPSLQLIPANPAVGHEIWEVMSLLPYEAR
YRLYGEWEKDDERNPLLLAARQVAKLDTRWILKRLAKENLKPLGRMVAKLAHANPMTVLR
TIVTQIEAYRDMIAPVVDAFKYLTQLEYDILEYVVIERLVQGGRAKLKDDGINLSDWLQS
LASFWGHLCKKYPSMELRGLFQYLVNQLKRGQGIELVLLQELIQQMANVQYTENLTEDQL
DAMAGSETLRYHATSFGMTRNNKALVKSSNRLRDSLLPNDEPKLAIPLLLLIAQHRSLVV
VNADAPYIKMVTEQFDRCHGILLQYVDFLSSAVTPATAYAQLVPSLEELVHTYHLEPEVA
FLVFRPVMRLFKCRRNGDVSWPLDSGESIDADSDVSKSESSMILDVGTSEKAVTWSDVLD
TVRTMLPSKAWNSLSPDLYATFWGLTLYDLHVPRSRYESEISKQHTALKTLEEVADNSSS
AITKRKKEKERIQESLDRLTGELKKHEEHVASVRRRLSREKDKWLSSCPDTLKINMEFLQ
RCIFPRCTFSMADSVYCAMFVHMLHSLGTPYFNTVNHIDVLICKTLQPMICCCTEYEVGR
LGRFLFETLKIAYHWKSAESIYESECGNMPGFAVYYRYPNSQRVTFGQFVKVHWKWCAKI
TKLLIQCLESNEYMEIRNALIMLTKISGVFPVTRKTGYNIEKRVAKIKNDEREDLKVLAT
GVAAALSARKSSWVTDEEFGMGYLELKAPPVHTPKHTPSQNGLVGGESTGGRSTANQQPE
FGGKDQLSKTKIPDGRTENMPSKSDQGHPKSKGGNPSDAQPSMSKKPVDQKETDESPRIS
DENPVKAGSKYSEAELKPSSKRGASATSTNKSTKQDFGKDDGKSGKAAGRTSAADNDVIY
LGSRQASLTKASPSTAGNGSLATGSSKVKDDGAEATDTQKQSTRTAHSPRHEISTSSRSS
DRLQKRANAVEDSDRTSKRRKADSEHKEHDSEARPSDRDRSAEARVDLNKTPSDDQSTQR
DQDRAKDKGNERQDRDHRERVERSDKTRADDAVKARDKSMERYGRERSVERGLDKGITRS
YDRNKDERSKDDRSKLRHSEASLEKAHGDDRSLSQGLPPPPPLPPNIVPHSMASKEEPER
RAGVTRHSQRLSPRHDERERRRSEENTSVSVEESKRRRDDDFRDRKRDDRETIILKGEER
EREREREREKSIPLKDDFEASKRRKIKRDQQVSSAEPGEYSPMPHQSSLSMGMGPSSYEG
REQRKSSSSMIQHGGYPEEPSIRLLGKEASSKMARRDPDPMYDREWEEDKRQRAERKRRD
RK
NT seq 5409 nt   +upstreamnt  +downstreamnt
atgtctcttccgctacttgagtgtaagtacgtgacggaggagttcgttcgcgaagggaag
agtggcagctacggttccaagttgcccagctcggtaccgatgcttcgtttcctatacgag
ctttgttgggttttggttcgtggcgagttgccgattcagagctgtaaggctgtgttggag
aaggtgaagtttttggatgatccgtcgaaggaagagttagcttcttgttttgcggatgtt
gtgactcagatagctcaagatcttactatgtcgggggatcaccgttctcgcctaacaaaa
ttggcaaaatggcttgtggaatcacagacagttcctcaaaggattttccaagagcgttgt
gaggaggagtttttatgggaagctgaaatggttaaaattaaagcccaagatttgaagggg
aaagaggtgcgattaaacactcgtcttctgtaccagcagacaaagttcaacttactccgt
gaagaaagcgagggatatgccaaattgattacccttttatgccgaggatctgcaggttct
tcgcataatgcatcagcagcaaccatgggaattatcaagtcattaattgggcattttgac
cttgatccgaaccgtgttttcgacattgtgttggattgctttgaacttgaacaagattac
gacacgtttctcaatctaattcctatctttcccaagtctcatgcttcacaaattcttgga
tttaaatttcaatactatcagagattggaggtgaatagcccagttccatctgggctctat
aagcttacggccttgctagtaaagaagaatttcatcagtcttgaaagcatatatgcacat
ctgctacctaaggacgaagaagtttttgaggattataatacttattctgcaaagcgtttt
gaagaggccaataatattggaaagataaatcttgctgctactgggaaggatcttatggag
gatgagaagcaaggagatttcaaagttgatctctatgctgctttagacatggaaactgaa
gctgttgctgagcgaataccagagcttgaaaataatcagactctgggcctccttgatggt
ttcctctctgtggacgactggaaacatgccaatatcatgttcgagcgtcttgcgcctctt
aatccggtggctcacaatcatatatgtgatggcttgtttaggcttatagagaagagaatc
actcatgcttatcgcattgcccgtcagacacgttttcaaaattcttcttctgcgagttca
gaaaagattgcccacgctgctaatacaagtgccagtaaaacttgtccagatcttaaagaa
gtgtttcagatacttgttacagttggaccctacttgtaccgtaatacacaactgctgcag
aagatttgtagactattaagggtttactacttgtcgtccttagatcttgttcgcagtagt
gatgggtcatcaaatcaagaaggtagtgcagatgaaatcaagcacctgaaggaagctagg
tttagagtggaagaagcccttggaacatgccttctgccatcgttacagttaatacctgca
aatccagcagttggtcatgagatttgggaagtgatgagtctccttccatatgaggctcgt
tatcgcttatatggtgagtgggaaaaggacgatgagcggaatcctttgctgttggcagca
aggcaagtggctaagttggacactagatggattctgaaacggcttgcaaaagaaaatttg
aagccgttaggaaggatggtggcaaaacttgcgcatgccaatcccatgacggtgcttcgg
acaattgtgactcagattgaagcatacagagatatgattgctcctgttgtagacgccttc
aagtacttgacacagctcgagtatgatatcctggaatatgtcgtgattgagagactggtg
caaggcggacgagctaaactcaaagatgacgggattaatttatcagactggcttcaatct
ttggcttcattttggggtcacctgtgtaagaagtatccatcaatggagttaaggggtctt
ttccagtatctcgttaaccagttaaagagaggccaagggattgagcttgttcttctccag
gaactgatccagcagatggcaaatgtacaatacactgagaatcttactgaagatcagttg
gatgccatggcaggaagtgagacattacgttatcacgcaacatcctttggcatgacacgg
aacaacaaggcacttgtcaaatcatccaaccgtctacgagattcgttacttccaaatgat
gaaccaaagctagctatcccccttttgttacttatcgcccagcatcgttctctggttgtg
gtaaatgcggatgcaccctacattaagatggtcactgaacagttcgacagatgtcatgga
attctcctccaatacgtggactttctttctagcgctgttactcctgctactgcttatgct
cagctcgtaccttcgcttgaagagcttgttcatacataccatcttgagccagaggtcgct
tttttggtatttcgacctgtgatgaggctcttcaaatgtcgacggaatggtgatgtttca
tggcctttggacagtggggaatctattgatgcagattccgatgtatcaaaatctgagagt
tccatgattcttgatgtcggcacatctgaaaaagctgtaacgtggtctgatgttcttgat
acagtaagaacaatgctgccttcgaaagcttggaatagtctgtcgccagacctctacgct
acattttgggggcttactctgtatgatctccatgttcccagaagtcgttatgagtctgag
atatctaaacaacatactgcccttaagactcttgaagaggttgctgataattctagctca
gcaattacgaagagaaaaaaagagaaggaaaggattcaagaatctcttgatcgtctaacc
ggtgaactgaaaaagcacgaagaacatgttgcctctgtccgtagaaggctttcacgtgaa
aaggataaatggttgagctcctgtcctgatactttgaagatcaatatggagttcctgcaa
cgttgtattttccctcgttgcacatttagcatggcagattctgtgtactgtgctatgttt
gtacatatgctccactctcttggaacaccctattttaacacagtcaaccacattgatgta
ctgatatgtaaaacgctacaaccgatgatctgctgctgcactgaatacgaggttggaaga
cttgggaggtttttattcgagaccttgaagattgcataccactggaagagcgcagaatca
atctatgaaagtgagtgcggaaacatgcctgggtttgctgtttattatagatacccgaac
agccagcgtgtcacatttggacaatttgtgaaggtacattggaaatggtgtgcaaaaatc
acaaagcttttgatccaatgtctggagtcaaatgagtacatggagattcgtaatgcgcta
ataatgctaacaaaaatatctggtgttttcccagttactcggaaaactggatataatatc
gagaaacgggtagcgaaaattaaaaatgatgagcgagaggaccttaaggtcttggcaact
ggtgttgccgctgctctatctgcaagaaaatcatcatgggttactgacgaagaatttggc
atgggttaccttgaactaaaggctccgccagtacatactcctaaacatactccttcccag
aatggcttggtaggtggtgaatcaactgggggaagatctactgctaaccagcagcctgag
tttggcggcaaggatcagttgtcaaaaactaaaataccagatggaagaacggaaaatatg
ccttcaaaatctgatcaaggacatccaaaatcaaagggaggcaatccatcggatgcccaa
ccatctatgtctaagaaaccagtggaccaaaaggaaacagatgaatcacccaggatatct
gatgagaatcctgtcaaagctggttcaaagtactctgaagccgagttaaaaccttcttct
aaacgaggtgcatcggctacgtcgacgaacaaatcaacaaagcaagattttggaaaagat
gatggaaagtccggtaaagctgctggaagaacatccgcagctgataacgatgttatttat
ctggggagcaggcaagcaagtttgaccaaagcttctcccagcacagcaggcaatggtagc
ttagctactggttcgtccaaagtgaaagatgatggtgctgaagctacagatactcaaaag
caatctactcggactgctcattcccctaggcatgaaattagcacttcttcgaggtcgagt
gataggttacagaaacgagctaatgctgttgaagatagtgacagaacaagtaaacgccgt
aaagcagactctgagcacaaagagcatgacagtgaggctcgcccgagtgatagagacaga
tcagcagaggctagggtggatttaaacaaaacacccagtgatgaccaaagcacccagaga
gatcaagacagggcaaaggataagggtaatgaaagacaggaccgagaccacagagaaaga
gtcgagcgttctgataaaactcgtgcagatgatgcggtaaaagcacgagacaaatccatg
gaacgttatggcagagagcggtcagttgagaggggccttgataaaggaataactaggagt
tacgatagaaacaaggatgaaagaagcaaagatgacagaagcaaattgcgtcatagcgag
gcgtcacttgagaaagctcatggtgatgatcgttctctttctcaaggcttacccccacct
ccacctctacctcctaacatcgttcctcattctatggcctcgaaagaagaacccgaaagg
agggccggagttacaaggcattcccagaggctttctccgaggcatgatgaaagagagaga
cgacgctctgaagagaatacatcagtttctgttgaagaatcaaaacgaagaagagatgac
gattttcgtgaccgtaagcgagatgacagagaaacaatcattctgaagggagaagaaagg
gaaagagagagggaaagagaaagagaaaaaagtatcccattgaaagatgattttgaagcg
tccaagagaaggaagataaagagggatcaacaagtctcatctgcagagccaggggaatac
tctccaatgccacatcagtcatctttgtcaatgggtatgggaccatcatcgtacgaaggc
agagagcagcgaaagagcagtagtagtatgattcaacatggaggttatcctgaagagcca
agcatcagacttcttggcaaagaagcttccagcaagatggctcgtcgtgatcctgaccca
atgtatgatcgtgagtgggaagaagacaagaggcaaagggcagaacggaagcggagagat
cggaagtag

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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