KEGG   Brassica napus (rape): 106360102Help
Entry
106360102         CDS       T04128                                 

Definition
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
bna  Brassica napus (rape)
Pathway
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106360102
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bna03041]
    106360102
Enzymes [BR:bna01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     106360102
Spliceosome [BR:bna03041]
 Complex C
  Other components
   Step II factors
    106360102
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: HA2 OB_NTP_bind Helicase_C AAA_22 DEAD AAA_30 AAA_19 T2SSE PhoH ABC_tran AAA_16 DUF2462 FtsK_SpoIIIE Peptidase_S41
Motif
Other DBs
NCBI-GeneID: 106360102
NCBI-ProteinID: XP_013655152
AA seq 688 aa AA seqDB search
MAQGELKSSVLNRKRNPKSPVASRSSKKQKIAEHRKSLPIASEEERLIEAVQKNDILIIV
GETGSGKTTQLPQFLFNAGFCREGKMVGITQPRRIAALTIAKRVAEECDVPLGQKVGYSV
RFDDTTSSSTRLKYMTDGFLLREALVDRLLSRYSVIIIDEAHERTVHTDVLLALLKKVQR
ERSEIGGVLRGCQGRKVSPLKLIIMSASLDARVFCDYYGGAKDFRVEGRQFDVDMFYTVH
PETDYVDAALNTIFQIHSEEEEGDILVFLTGQEEIESVERLVHEKLQHLPEDERKLLPLA
IFSALPSEQQMRVFAPAPIGFRKVVLATNIAETSITIPGIRYVVDSGVVKARTYDPNKGM
ETLDVVPVSKAQAIQRSGRAGRDGYGKSFHLYPERDFWKLEDSTKPEIKRCNLSNVILQL
KALGIDDILGFDFIDKPSRSAIVKALAELHLLGALTDDCKLAKPAGEQMARLPLEPVYSR
ALILANQFNCLEEMLIIVAMLSVESIFYDPRQKREEARTSRNHFVSVEGDHLTYLSVYRE
LDEFLEERKAEKSEAKVEKIMRKWCKVNFVNSRSLKHARDIYRQIRGNVEQMGFNVSSCG
NDMLEYRRCIAASFFLKAAQRQMDGTYRALESGEIVHIHPSSVLFRSKPECVIFDELMQT
SQKYINNLTRIDPLWLAELAPHHYKTEE
NT seq 2067 nt NT seq  +upstreamnt  +downstreamnt
atggcgcaaggagaactcaagagctctgtgctaaacaggaaacgaaaccctaaatcaccc
gttgcttctcgctcaagcaagaagcagaagatagcagaacatagaaagtctcttcctata
gcttcagaggaggaacgtcttattgaggcggttcaaaagaatgatattctgattattgtt
ggtgaaaccggtagtgggaagactactcagctgcctcagttcctgttcaatgctggtttc
tgtcgggaaggaaagatggtagggataacacagccgaggcgtatcgctgccctgaccatt
gccaaaagggtagctgaggagtgtgatgttccgctaggacaaaaggttggctactccgtt
aggtttgacgatactacttctagctccacgaggttaaaatacatgactgatggtttcttg
ctgagagaggcgttggtggatcggcttctttctagatattcagtcattattatcgatgaa
gctcacgagaggactgttcatactgatgttctcctggccttgcttaaaaaggtgcaacgg
gagagaagtgagattggtggtgtgttgagaggctgtcaaggcagaaaagtatctccgtta
aagctgataatcatgtccgcgagtttggacgcacgtgttttctgtgactactacggcggt
gccaaagattttcgtgtggaagggagacagtttgatgtggacatgttttacactgttcat
cccgagactgattatgtagatgcagctttgaatactatatttcagattcattcggaggag
gaagaaggtgatatacttgttttcctcactggacaagaggagattgaatctgttgagaga
ctagtccacgaaaaacttcagcatttacctgaagacgagaggaagctgctgccacttgct
atcttttctgctcttccatcagagcagcagatgagagttttcgcccctgcgcctattggt
ttccgtaaggtggttttggccacaaatatagcggagacatcgattacaattcctggaata
agatatgtggtagactctggggttgttaaggcacgaacctatgatccgaacaaaggaatg
gagacgcttgatgttgttccagtatcaaaagcacaggccattcaacgaagtgggcgcgca
ggacgtgacggttatgggaaaagtttccatctttatcctgagagggatttttggaaactg
gaggattcaaccaaaccagagatcaagagatgcaatctctctaatgtcattttgcagctc
aaggctctggggattgatgatattcttggatttgattttattgataaaccttcaaggagc
gccattgtaaaagcattggcggagttgcacttgcttggtgccttgactgatgattgcaaa
ctagcaaaacccgctggggaacaaatggcacggctcccactagagcctgtttactccaga
gctctgattttagccaatcagttcaattgtcttgaggaaatgttaatcattgttgcaatg
ctttctgtggaatccatattttatgatcctcgtcagaagagagaagaggcaagaacttca
agaaaccactttgttagcgttgaaggggatcatctaacttatctcagtgtctatcgagag
ttggatgagttcttggaggagagaaaggcggaaaaaagtgaagcgaaagttgagaaaatt
atgagaaagtggtgtaaggtcaacttcgtgaatagtcgttccttgaaacatgctcgtgac
atttatagacaaattcgtggaaacgttgaacagatgggttttaatgtgtcttcatgcgga
aacgacatgcttgagtaccgtagatgtattgctgcgtcgtttttccttaaagcagcacag
agacagatggatggtacatacagggctttggaaagtggtgagattgtgcacatccaccca
agttctgttttattccgttccaaacctgagtgtgttatcttcgacgagcttatgcaaacc
agccagaagtacatcaacaacctgacaagaattgatcctttatggttggctgagttggct
cctcatcattacaaaacagaagagtga

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