KEGG   Brassica napus (rape): 106361615
Entry
106361615         CDS       T04128                                 
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37e
  KO
K03283  heat shock 70kDa protein 1/6/8
Organism
bna  Brassica napus (rape)
Pathway
bna03040  Spliceosome
bna04141  Protein processing in endoplasmic reticulum
bna04144  Endocytosis
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106361615
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    106361615
 09140 Cellular Processes
  09141 Transport and catabolism
   04144 Endocytosis
    106361615
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:bna01009]
    106361615
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bna03041]
    106361615
   03009 Ribosome biogenesis [BR:bna03009]
    106361615
   03110 Chaperones and folding catalysts [BR:bna03110]
    106361615
   04131 Membrane trafficking [BR:bna04131]
    106361615
   03051 Proteasome [BR:bna03051]
    106361615
   03029 Mitochondrial biogenesis [BR:bna03029]
    106361615
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:bna04147]
    106361615
Protein phosphatases and associated proteins [BR:bna01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-5
    PP5-interacting proteins
     106361615
Spliceosome [BR:bna03041]
 Complex B
  Other components
   Prp19 complex
    106361615
 Complex C
   Prp19-CDC5 complex
    106361615
Ribosome biogenesis [BR:bna03009]
 Eukaryotic type
  Pre-60S particles
   Export and cytoplasmic maturation factors
    106361615
Chaperones and folding catalysts [BR:bna03110]
 Heat shock proteins
  HSP70 / DNAK
   106361615
Membrane trafficking [BR:bna04131]
 Endocytosis
  Clathrin-mediated endocytosis
   Other core components
    106361615
 Autophagy
  Chaperone mediated autophagy (CMA)
   Chaperones
    106361615
Proteasome [BR:bna03051]
 Eukaryotic proteasome
  Assembling factors
   Other assembling factors
    106361615
Mitochondrial biogenesis [BR:bna03029]
 Mitochondrial protein import machinery
  Endoplasmic reticulum membrane and cytosol
   Other ER-memrane and cytosol factors
    106361615
Exosome [BR:bna04147]
 Exosomal proteins
  Proteins found in most exosomes
   106361615
SSDB
Motif
Pfam: HSP70 MreB_Mbl Hydantoinase_A PG_binding_4
Other DBs
NCBI-GeneID: 106361615
NCBI-ProteinID: NP_001302519
UniProt: O48563
Position
C4:complement(55053680..55056023)
AA seq 645 aa
MSGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPINTVFDAKRLIGRRFSDSSVQSDMKLWPFKIIAGPAEKPMIVVNYKGEEKQFAA
EEISSMVLIKMREIAEAYLGVTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEP
TAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKSKKDITGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLFEGIDFY
SALTRARFEELNMDLFRKCMEPVEKCLRDAKMDKSTVHDVVLVGSTRIPKVQQLLQDFFN
GKELCKSINPDEAVAYGAAVQGAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTTLIA
RNTTIPTKKEQVFSTYSDNQPGVLIQVFEGERARTKDNNLLGKFELSGIPPAPRGVPQIT
VCFDIDANGILNVSAEDKTTGQKNKITITTDKGRLSKDDIEKMVQEAEKYKSEDEEHKKK
VEAKNALENYAYNMRNTIQDEKIGEKLPAADKKKIEDAIEQAIQWLENNQLGEADEFEDK
MKELESICNPIIAKMYQGAGGEAAGMDDDAPPASGGAGPKIEEVD
NT seq 1938 nt   +upstreamnt  +downstreamnt
atgtctggtaaaggagaaggtccagcgatcggaatcgatctcggtacgacgtactcttgc
gtcggagtatggcaacacgaccgtgttgagatcatcgctaatgatcaaggtaacaggacc
acgccgtcttacgtcgctttcaccgactccgagaggctcatcggtgatgccgctaagaac
caggtcgccatgaaccctatcaacaccgtcttcgatgcgaagaggctgatcggtcgtcgt
ttcagcgacagctctgtacagagcgacatgaagttgtggccattcaagatcatcgcagga
cctgcggagaagcctatgatcgtcgtcaactacaaaggcgaggagaaacagttcgctgcg
gaggagatttcctccatggttctcattaagatgcgtgagattgcagaggcttacctcggt
gtcaccatcaagaacgcagttgtcactgtccctgcctacttcaacgactctcagcgtcag
gctacaaaggacgctggtgtgattgctggtttgaacgttatgcgtatcatcaacgagccc
acagccgctgctattgcttacggtcttgacaaaaaggcaaccagcgttggagagaaaaac
gtgttgatctttgatcttggtggtggtacttttgatgtctcccttctcactattgaggaa
ggtatctttgaggttaaggcgactgctggagatactcatcttggtggtgaggacttcgac
aacagaatggtgaaccactttgttcaggagtttaagaggaagagcaagaaggacattacc
ggaaacccaagagctcttaggaggttgaggacggcctgtgagagagcaaagaggactctt
tcctccactgctcaaaccaccatcgagattgactctctctttgagggcattgatttctac
tctgcgctcacccgtgctagattcgaggagctcaacatggatctctttaggaagtgtatg
gagccagtcgagaagtgtctacgtgatgctaagatggacaagagcaccgtccacgatgtt
gtccttgtcggctccacccgtattcccaaggttcagcaattgcttcaggacttcttcaac
ggcaaagagctttgcaagtctatcaaccccgacgaggccgttgcttacggtgctgccgtt
cagggagctattctcagcggtgaaggaaacgagaaggtccaggatcttctcttgctcgat
gtcacccctctctcactcggtcttgagaccgccggtggtgtcatgaccactttgatcgca
agaaacacgaccataccaaccaagaaggagcaagtgttctcgacctactctgacaaccaa
ccaggtgtgttgatccaggtgttcgaaggggagagagccagaaccaaggacaacaacctc
ctcggtaagtttgagctctctggaatccctccggctccacgtggtgtcccccagatcact
gtctgcttcgacattgatgccaacggtatcctcaacgtctctgctgaggacaagaccacc
ggacagaagaacaagatcaccatcaccaccgacaagggtcgtttgtccaaggacgatatc
gagaagatggttcaagaggctgagaagtacaagtctgaggatgaggagcacaagaagaag
gtggaagccaagaacgctctcgagaactacgcttacaacatgaggaacaccatccaggac
gagaagattggtgagaagctaccggctgcagacaagaagaagatcgaggacgctattgag
caggcgattcagtggctggagaacaatcagttgggtgaggctgatgagttcgaggacaag
atgaaggagttggagagcatctgcaacccaatcattgccaagatgtaccaaggagctggt
ggtgaagccgcagggatggacgatgatgctcctcctgcctcaggcggtgctggccctaag
atcgaagaggtcgactaa

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Ontology (9)   
   KEGG BRITE (9)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (4)   
   Pfam (4)   
All databases (26)   

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