KEGG   Brassica napus (rape): 106365593
Entry
106365593         CDS       T04128                                 
Name
(RefSeq) protein PAT1 homolog
  KO
K12617  DNA topoisomerase 2-associated protein PAT1
Organism
bna  Brassica napus (rape)
Pathway
bna03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106365593
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106365593
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106365593
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     106365593
SSDB
Motif
Pfam: PAT1
Other DBs
NCBI-GeneID: 106365593
NCBI-ProteinID: XP_013660478
UniProt: A0A816L5A9
Position
C5:8670022..8673818
AA seq 761 aa
MDLKQIGDNSTGGNSVFDASQYAFFGNHVVEEVELGGLDDEEEQFPLAGIGQDFAFDKEE
TELSRTLSDVDDLAGTFSKLNRDHDGHRSTVPIADNGSRQNYFVDGRNQGEELPNLYGQQ
ILDSNDKRWISQPFSTPDLIEQRNLHRAISYPEPQHHQRPHQHQQQFSSEPILLPKSSGG
RPPDQQYHSGGPHMGSPNLSPFPNSHPRLVGMHHGSPQLTGNMPQFQPLNNRPPAQWMNR
PNMYPEDTSGIMNMLPQQQLPHQNGLLPPQQRMPQMPVPQNSIPHPMQPHGHLPGMQPQV
FNSHLSRSSSSGSYDAMLGFGDMREARPGSGQGNRQNMRFHQHSFDGGLQRRDSCFRSKY
MSADEIENMLKIQLAGTLTNDPYVDDYYHQARLAKKPEGEKQKHRFCPNHLRDLPSRART
NNEPHAFLHVDALGRVPFSSVRRPRPLLEMDPKSGNLEHRNTVKPLEQEPMLAARVTIEE
GLYLFLEVDDIDRFLKFNQVQDGGNQLRQKRQALLDGLAVSLQLVDPLGKNGQNDGIESQ
DNLVFLRIISLRKGRKLLTRYLQLLIPDSDLMRIVSMAIFRHLRSLFGARSSDTETRETT
IKLAKVIVLCIQTMDLGPVSACLAAVSCSSEQPPLRPLGSPVGDEATVILKCALDRAAEL
LRANHYNNAGMNLWRASFDEFFNLLMKHCISKYDSIMQNLNSQLSPHFGAEMTEAAAQAI
VREMPIELLRASFPHISDEQKRILVEFLKLGSQKADAVINQ
NT seq 2286 nt   +upstreamnt  +downstreamnt
atggatcttaagcagattggagataactctacaggtggtaactctgtctttgatgcatct
cagtatgccttttttgggaaccatgttgttgaggaggttgagcttggtggcttggatgac
gaagaagagcagtttcctctggctgggataggacaagatttcgcctttgataaggaagag
actgaactttccagaactctctccgacgttgatgatcttgctggcacattttcaaagctg
aatagggatcatgacggacatagaagcacggtaccaatagctgacaatggatcaagacag
aattattttgttgatggacggaaccagggggaggagttgccaaatttgtatggccagcag
atactggattccaatgacaaaaggtggatatctcagcctttttctactccagatcttatt
gagcaaagaaacctgcaccgagcaatatcatatcctgagccacagcatcaccagcggccg
caccagcatcagcaacaattttccagcgaacctattcttctgccaaagtcatctggtggc
agaccgccagatcagcaatatcattctggcgggcctcatatgggatccccaaatctctcc
ccttttccaaattctcatcctcggttggttggcatgcatcatgggtcaccacagctcact
ggaaacatgcctcagtttcaacctctgaacaatcgcccaccagctcaatggatgaatcgg
ccaaacatgtatcctgaggatacttctgggatcatgaacatgttgccacaacagcagtta
cctcatcaaaacggtttgttgcctccacagcagaggatgcctcagatgccggttccccag
aatagtataccacatccgatgcagcctcatgggcatttgccaggaatgcaacctcaggtt
tttaattcccacctttctcgttcttcatcctcaggcagttatgatgcaatgcttgggttt
ggtgatatgagggaagcaagaccaggatcaggccaggggaacagacaaaacatgcggttt
catcaacatagttttgatggtggtcttcaaaggagagatagttgtttccggtcgaaatac
atgtcagctgatgaaatagagaacatgctaaaaatccagcttgcaggcacacttaccaat
gatccttacgtggatgattattaccaccaggctcgtcttgctaagaaaccggagggtgaa
aagcagaagcatcgcttctgtccgaatcatttgagagaccttccatctcgtgcacgtacc
aacaacgagccccatgcgtttcttcatgttgacgctcttggtcgagttcctttctcttct
gtccgcaggcctcgtcctctgcttgaaatggatcctaaatctggtaacctggagcatagg
aatacagtcaagcccctcgaacaagaaccaatgcttgcagctagggtgactatcgaggaa
ggtctctacctcttcctggaagtagatgatattgaccggttcttaaagttcaatcaagtc
caagacggtggaaaccagttgaggcaaaagcggcaagctctgttggatgggcttgcagtg
tcgctgcagcttgttgaccctctcggcaagaatgggcaaaacgatgggattgaatctcag
gataacctcgtgtttctgaggattatctcccttcgaaagggtcggaagctactcacaagg
tacctccagcttcttatccctgacagcgacctgatgcgaatagtttccatggccattttc
agacacttaaggtccttgttcggagctcggtcgtcagataccgaaaccagggagactaca
atcaaacttgcgaaagtcatcgttttgtgcattcaaaccatggatcttggacccgtaagt
gcgtgcctagcagcggtttcttgttcttctgagcagccaccgcttcgtcccttgggtagt
cccgtgggagacgaagctacggttattctcaaatgcgcactcgacagagctgccgagctt
ctccgtgctaatcattacaacaacgcaggcatgaatctgtggcgtgcgtcctttgatgag
ttcttcaacttgctgatgaaacattgcatcagcaagtacgacagtataatgcagaatctg
aattcgcagttgtcaccacactttggcgcggagatgactgaagctgctgcacaagccatt
gtcagggaaatgccgatcgagcttctacgtgcgagtttcccacacattagtgatgagcaa
aagagaatacttgtggagttcttgaagcttggtagccagaaagcggacgcagtcataaat
caatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

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