KEGG   Brassica napus (rape): 106400784
Entry
106400784         CDS       T04128                                 
Name
(RefSeq) RNA-dependent RNA polymerase 1
  KO
K11699  RNA-dependent RNA polymerase [EC:2.7.7.48]
Organism
bna  Brassica napus (rape)
Brite
KEGG Orthology (KO) [BR:bna00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:bna03036]
    106400784
Enzymes [BR:bna01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.48  RNA-directed RNA polymerase
     106400784
Chromosome and associated proteins [BR:bna03036]
 Eukaryotic type
  Gene silencing
   RNA interference (RNAi) pathway
    RDRC (RNA-directed RNA polymerase complex)
     106400784
SSDB
Motif
Pfam: RdRP RRM_1 SinI ELFV_dehydrog_N
Other DBs
NCBI-GeneID: 106400784
NCBI-ProteinID: XP_013696632
UniProt: A0A816KT95
Position
C5:complement(7288528..7292588)
AA seq 1111 aa
MGKTIRVFGFPNGVSAEEVKNFLERLTGSGTVYAIKVRQPRNGGPRVFAIVQFTSERLAR
DIVTLASQRLNYGRSYLKASEVEQDIVPKPRASLHNIPSLKMYFGCQVSPKKLSVFWSAQ
NVAFSFGTGMRKLHFSMSWCEKDYRLELPYENIWQIDLHSPQGRRDSKFLVIQVIGAPKI
FEKEDQPVNLSFGLLDYFYSDGSDEQWIRTTDFTSSSCISQSSAFCLELPVHLNVPDFRE
NFANYTEHEASTFVVEPGRSFSSNANKLVPVVDPPPGCYLPFEILFKVNTLVQNACVPGP
ALDPAFYQLLNPQRFDRALIDHCLEKLFHLPECCYAPAHWLLEEYSSWVTKGKLPQSPMI
SLDDGLVYMYRVQVTPTRVYFSGPEVNVSNRVLRHYSDYINNFLRISFVDEDLEKVRSMD
LSPRSSTVRRTKLYERINSVLRDGIVIGDKRFEFLAFSSSQLRENSAWMFAPVNGITAAD
IRAWMGEFDNIRNVAKYAARLGQSFSSSRETLTVRRDEFEVIPDVEIRSSDAHYVFSDGI
GKISAKFARRVAKKCGLTEFFPSAYQIRYGGYKGVVAVDPNSWKKLSLRRSMSKFESENT
KLDVLAWSKYQPCYMNRQLITLLSTLGVEDNVFEKKQREVVNQLDAILTDPTEAFEALGL
MAPGENTKILKELILCGYKPDAEPFLSMMLQNFRASKLLELRTKTRVFIPRGRSMMGCLD
ETRTLEYGQVVVQYTDPTRPGSKYIVTGLVVVAKNPCLHPGDVRVLQAVNVPALSHMVDC
VVFPQKGPRPHPNECSGSDLDGDIYFVCWDPELIPTGTSEPMDYTPEPTQILDHDVTIEE
IEEYFTNYIVNDSLGIIANAHTAFADKEPLKAFSDPCIELARKFSIAVDFPKTGVAAEIP
QHLYVKEYPDFMEKPDKPTYESNNVIGKLFREVKERAPPLISIKSFTLDVASKAYDKDME
VNGFEEYVDQAFFHKGNYDYKLGNLMDYYGIKTEAEILSGGIMRMSKSFTKRRDAESIGR
AVRSLRKEALSWFNASDEEEEVVNESAKASAWYHVTYHRSYWGVYNEGLNRDHFLSFAWC
VYDKLVRIKKANVGRRQRQEALERLGLMRLS
NT seq 3336 nt   +upstreamnt  +downstreamnt
atggggaagacgattcgagtgtttggtttccctaacggcgtgagcgcagaggaagtcaaa
aacttcctcgaaaggctcactggctcaggcacggtctacgcaatcaaagtcagacagccc
agaaatggcggtcctagagtcttcgccatcgttcagttcacatccgagagactcgctagg
gatatcgtcactctagccagccagcgtctcaactacggaagatcttacctcaaggcctcc
gaagtcgaacaagacatcgtccccaaacctagagcctcgttgcacaacatcccgagttta
aaaatgtacttcggatgccaagtctctcccaagaagctttcggttttctggagcgctcaa
aacgtcgctttctcgttcggaaccgggatgcggaaactccacttctcaatgtcttggtgc
gagaaggactatcgcctcgagcttccttacgagaacatatggcagatcgatttgcattcc
cctcaaggacgtagagactcgaagtttcttgtgattcaggtcattggtgctccgaagatc
ttcgagaaggaagatcaacctgttaacctctcgttcgggttgctagattatttctacagc
gacgggtccgatgagcagtggataagaactacagacttcacttcctcttcatgtataagc
caatcatcagccttttgtttagagcttcccgtgcatctcaacgtccctgacttcagagag
aacttcgcaaactacaccgaacacgaagccagcactttcgtggtcgaacccgggcgtagc
ttctcatcaaacgcgaacaaactcgtccctgttgttgaccctcctccagggtgttacctc
cctttcgagatcttgttcaaagtcaacacactggtccaaaacgcttgcgtcccaggacca
gctctcgatcccgccttctatcagctccttaacccgcagagattcgatagagctctcata
gatcactgcctcgagaagctctttcatctccctgaatgttgttacgctcccgctcattgg
ctgctcgaagagtactcatcatgggtcacgaaagggaagcttccacagtctccgatgata
tctctagacgatgggcttgtgtacatgtatcgagtccaagtcacgcctactagagtctat
ttctctggccccgaggtgaacgtttcgaaccgtgtgctacgtcactactcagactacatc
aacaactttttacgtatctcgtttgtcgacgaagatctcgagaaagttcgctccatggat
ctctctccacgctcctctaccgtgagaagaacaaagttatacgagaggattaactctgtt
cttagggacgggattgtcatcggtgataagaggttcgagtttctcgcattctcttcctcc
cagctgagggagaactccgcgtggatgttcgcgccggtcaacgggatcaccgcagctgac
atcagagcttggatgggtgaattcgacaatatacgaaacgtggctaaatacgctgccagg
ctcggccagtcgtttagctcgtcgagggagacgcttactgttaggagagatgagtttgaa
gtgattccagatgtcgagatcagatcttcggacgcgcactatgtgttctccgacggtata
gggaagatctcagctaagttcgctagacgcgtagctaagaaatgcggcttgacggagttt
ttcccgtctgcttatcaaatccgttacggcggatataaaggagtggtggctgttgatccg
aactcgtggaagaaactgtctttgaggaggagcatgagcaagttcgagtcggagaacacg
aagctggatgtgttggcgtggagcaagtaccaaccttgttatatgaacagacagctgatc
acgcttctgtctactctcggagtcgaagacaatgtcttcgagaagaaacaaagggaagtt
gtgaaccagctcgacgccatcttaaccgaccctacggaggctttcgaggctctcggtttg
atggctccaggggagaacacgaagattctcaaggagctaatcttgtgtggttacaaaccc
gacgccgagcctttcctctcgatgatgcttcagaatttcagagcgtcgaaactgttggaa
ctacggaccaaaactcgggttttcattcctcgcggaagatcgatgatgggatgcctagac
gagaccagaacgcttgaatatggtcaagtggtcgtgcagtatacggatcccactaggccg
ggaagtaaatacatcgtcacgggacttgttgtggttgcgaaaaacccgtgtctccatccc
ggtgacgtgcgtgttcttcaagctgtcaacgtcccagctttgagtcacatggtggactgc
gttgttttcccgcagaagggcccgcggccacacccaaatgagtgttccgggagtgattta
gatggagatatatactttgtatgttgggatcctgaactcattccaacaggaacgtctgaa
ccaatggactacactcctgaaccaactcaaatcttggatcatgatgtcactattgaggaa
attgaagagtatttcacgaactacattgtgaatgatagtcttggaatcatcgcaaatgct
catactgcttttgctgataaggaaccactaaaagctttcagtgacccgtgcattgagctt
gcacgaaagttctctatcgctgttgatttccccaaaacaggtgttgcagccgagatacct
cagcatctttacgtgaaagagtatccagatttcatggagaagccagacaaaccgacatac
gagtcaaataacgtgattggtaagctcttcagagaggtgaaagagcgagctccaccattg
atctcgatcaaatcgtttactcttgatgtggcctccaaggcttatgataaagacatggaa
gtcaacggattcgaggagtatgttgaccaagctttcttccacaagggcaactacgattac
aaattaggtaatttgatggattactatgggattaagacagaagctgagatacttagtggc
ggcatcatgaggatgtcgaagtctttcaccaagagacgggacgcggaatctattggaagg
gcggttaggtcgcttaggaaagaagctttgtcgtggttcaatgcttctgatgaagaagaa
gaggtggttaatgaatctgcaaaggcctcggcttggtatcatgtgacgtaccaccgaagt
tactggggagtttataacgagggtttgaaccgtgaccatttcttgagctttgcgtggtgc
gtttatgataagcttgtgaggattaagaaggctaatgttgggaggcgtcagaggcaggag
gctcttgagcggttaggcctcatgcgtttgagttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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