KEGG   Brassica napus (rape): 106404492Help
Entry
106404492         CDS       T04128                                 

Definition
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic isoform X1
  KO
K12818  ATP-dependent RNA helicase DHX8/PRP22 [EC:3.6.4.13]
Organism
bna  Brassica napus (rape)
Pathway
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106404492
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bna03041]
    106404492
Enzymes [BR:bna01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     106404492
Spliceosome [BR:bna03041]
 Complex C
  Other components
   Step II factors
    106404492
BRITE hierarchy
SSDB OrthologParalogGFIT
Motif
Pfam: Helicase_C IBR OB_NTP_bind HA2 zf-C3HC4_2 zf-C3HC4 DEAD zf-RING_UBOX zf-RING_2 AAA_22 zf-RING_5 Helicase_RecD zf-C3HC4_3 AAA_19 DUF2075 AAA_30 Secretin_N ABC_tran KH_1 AAA_29 RsgA_GTPase
Motif
Other DBs
NCBI-GeneID: 106404492
NCBI-ProteinID: XP_013700670
AA seq 1769 aa AA seqDB search
MRSSLPQPNSGRRSTTNRRWSLPSASPNPSYNSRSAHSSRPLSHQPTQSHHRSNFPPNHR
PDRAQPTRIKPNFIVQLVHPRTAAANTNTDANPSFSVRKQAIITLASLCGIPEESVHVPQ
LGSVAGSFGFRQWTNALSAVVSLWDHRLRGKHDFVPELVPNVVVPSDVDELRDRLRDLFS
SHVLSLVENGESVKKVRREIDEKSRRAESFDSKRGLRLEVFEMKKALEAERDLVVKRLEE
FKNAMMWIVRFLKRSDDGVEVDDVDVFSLEGDYDWPRVHSLIRRECRRLDDGLPIYAYRR
NILKKVYGQQVTVLIGETGSGKSTQLVQFLADSGVASSESIVCTQPRKIAALTLADRVRE
ESNGCYEEDSVRAFSSAEKFSSKVVFMTDNCLLQHYIKDRSLPGVSCVIIDEAHERSLNT
DLVLALLKDLLCKRVDLRLVIMSATADAYQLSEYFFGCEILRVAGRNFPVEIIYTPGSDT
EGTSVVGRVAPYADDVVKKAMEVHRTERDGTILAFLTSQAEVEWACERLIAPSAVALPLH
GKLSFEEQFRVFQSHPGRRKVIFATNIAETSLTIPGVKYVIDSGMVKESKYEARTGMSIL
KVCRVSKSSAQQRAGRAGRTEAGRCYRLYSKHEFTSMSLNQEPEIRRVHLGVAILRILAL
GVDNIADFDFIDAPDPEAVVMAVKNLVQLGAVVEKNGVLELTQEGHCLVKLGLEPKLGKL
ILGCFRHRMGKEGIVLAAVMANASSIFCRVGNLDDKMKADCLKVKFCNNNGDLFTLLSVY
KEWASLPRERRNKWCWENSLNAKSMRRCEDTVKELEICIERELSLVSPTYWVWNSTEGND
KHEKHLKMVILASLAENVAMYTGYDQLGYEVALTGQQVQLHPSCSLLAFGQKPNWVVFGE
LLSAVDQYLVCVTAFDFEALSMLDPPPPFDASHMDEWRLRVKKVAGCSSTLLKRFCGKSN
RSLLSIVSRARSLCEDERINIQVDVDQNEILLYAPPHDMDKVLSLVNDALECEKKLMRNE
CFEKYIYHGRGEVPLALFGSGAQIKHLEVDQRFLTVDVLYYGDNSLDDREILTFLEKEID
GCICSIHKFAGNKQDCDEKEKWGRVTFRTPESAMKATEIQKFDLNGSVIKLFPSLSAGGE
GVFKMPSVTAMIRWPQRESCGKGVLKCASGDIHSIFAGSSGIMIGTKYCPFETDQRHTDS
ILITGIDTNLSDAEVLDVLEFATQRTDLEFFLFRRGNIVHCQDLTVCKDMLHKRIFARLS
SRNPDPKCVEVKVFEPKEANFVRALITFDGRLHLEAAKALQELDGTILDGCYPWQKIKCE
QKFQSSIICPAFIYNIVRRQLYAKLASFKRQRKCEWHLEAIHSGAYRVKISANATRRISE
MRRSLEELIRGRPIINHPGLTPRVLQHLLSREGVILMRKIQQETETCIVVDRQSLAVRIC
GSEERTAAAEQELVRSLLAYHESKQLEIRLRGPNLRPDLMKEVVNRFGPELQGIKEKVNG
VDLKLNTRNHVIHVHGSVEMRQEVEKMVYELAREEGSALGGTKPDEIEVECPICLSEVED
GYSLEACSHLFCKACLLEQLEASMRNFDAFPIICSHIDCGAPIVLADMRALLSQEKLDEL
FRASLSSFVTTSDGEFRFCSTPDCPSIYRVAGPLDSGEPFFCGACNSQTCTRCHLEYHPY
ITCERYKLFKEDPDMSLKDWAKGKNVKECPCCKSTIEKSEGCNHLLCRCGNHICWVCLRW
FAQQEPCYEHLRGVHGGIGLFDELGMPML
NT seq 5310 nt NT seq  +upstreamnt  +downstreamnt
atgaggagttcacttcctcagcccaacagtggaagaagatccacgactaatcgtcgatgg
tcacttccctcagcttcccccaacccttcttataactctcgctccgctcactcttctcgg
cccctcagccaccagcctactcaaagccaccaccgctccaatttcccgccaaatcacagg
cccgatcgggcccaaccgactcgtattaagcccaatttcatcgtccagctcgttcaccca
agaaccgccgccgccaacaccaacaccgacgccaatccctctttttccgttagaaagcaa
gcgatcatcacactcgcttctctctgcggaatccccgaggagtccgtccacgtcccccag
ctcggctccgtcgccgggagcttcggtttccgccaatggaccaacgcgctctccgccgtc
gtgtctctctgggaccatcgcctccgagggaagcacgatttcgtccccgagctggttccc
aacgtcgtcgtcccgtccgacgtggacgagcttagagacaggctccgcgatctcttctcg
tctcacgttctctcccttgtggaaaacggagagagcgtgaagaaggtgagacgcgagatt
gatgagaagtctcgtcgagctgagtcctttgattccaaaaggggtcttaggttagaggtg
tttgagatgaagaaggctttggaggcggagagggatttggttgtcaagcggcttgaagaa
ttcaagaacgctatgatgtggattgtgcggtttctcaaaagaagtgatgatggagtggaa
gttgatgacgtggacgtgtttagtttagaaggggactatgattggccacgtgttcatagt
ttaatccgtagggagtgtcgaaggcttgatgatgggctgcctatctatgcttaccggcgg
aatattttgaagaaagtttatggccaacaggtaacggtattgattggagaaactggttca
gggaagagcactcagttagttcagtttcttgctgactccggagttgcgtccagtgagtct
atcgtttgtacacagccaaggaaaatcgctgcattgacattggctgatcgagtcagagaa
gaaagcaatggttgttatgaggaagattctgtccgagctttctcttctgcggagaagttt
agttccaaagttgttttcatgacggataactgtctgctccaacactacatcaaagatcgg
agtttgcctggcgtttcgtgcgttattattgacgaagcacatgaaagaagcttaaacacg
gacctggttttggcgttgctcaaagatctgctgtgcaaaagagttgacctgaggcttgtc
atcatgtccgccacggccgatgcttaccagctttcagagtatttctttggctgtgagatt
ctccgtgtcgcgggaaggaactttccggtggagattatatatacacctggtagtgacacg
gaagggacttctgttgttggccgcgttgctccatatgctgatgatgttgtaaagaaggcg
atggaagtgcatagaacagagagagatggaacgatccttgcattcttgacttcccaagca
gaggtagagtgggcatgcgaaaggcttatagctccatctgctgtcgctttgcctttgcat
ggaaagctatcttttgaagaacagtttagggttttccagagccatcctgggagacggaaa
gtgatatttgccacaaatattgcggagacctctctaactattcctggcgtcaagtatgtg
attgattccgggatggtgaaagagagcaaatacgaggctagaacgggtatgagcatcctc
aaggtttgcagagtcagtaaaagttcagctcagcaacgcgctggtcgtgctgggaggaca
gaagctgggagatgttacagactctactcaaaacacgagtttacttccatgagtcttaat
caggagcctgagattcggagggttcatctcggtgtagcgattttgaggattcttgctctg
ggtgtagacaacatagcggattttgattttatcgacgcgcctgaccctgaagccgtcgtg
atggctgtcaaaaaccttgttcagttgggtgcagtcgttgagaagaatggtgttcttgag
ttaacgcaggaaggacattgtttagtcaagctgggtctggagccaaagcttggtaagttg
attttgggatgcttcagacacagaatgggcaaagaggggattgttcttgctgctgtcatg
gccaatgctagtagtatattttgcagagttggtaaccttgatgataagatgaaagctgat
tgcctaaaggtgaagttctgcaacaataatggagacctcttcactcttctttcggtgtac
aaagaatgggcatctctgccgcgagagagaagaaacaaatggtgctgggaaaatagcctg
aacgccaaatcaatgaggagatgcgaagacacagtcaaggagctggagatatgcattgag
agagaactttctctcgtcagtccaacctactgggtttggaactcaaccgagggtaatgat
aaacacgagaagcatctgaaaatggttatacttgcgtctcttgccgagaacgtggcgatg
tacactggctatgatcagctcgggtacgaggtagcgttgactgggcaacaagtccagttg
catccgtcgtgttcgttgctagcgtttggccagaagccaaactgggttgttttcggtgag
cttctgtcagctgtcgaccagtacttggtatgtgtaaccgcgtttgatttcgaggctttg
tctatgcttgatccacctccaccttttgatgcatctcatatggatgagtggaggctcaga
gtgaaaaaggtggctggttgtagcagcactctgctgaaacgattctgtgggaaatctaac
cgtagtctgctttccatcgtctctcgtgctaggtctctttgtgaggatgagaggattaat
attcaagttgatgtagatcagaacgagattctactatatgcgcctccccacgacatggac
aaagtgttgtccctagtgaacgatgcattggaatgcgaaaagaagttgatgcgtaacgaa
tgttttgagaagtatatatatcatggtcgaggagaagtaccccttgcactgttcggatcc
ggcgctcagataaagcatcttgaagttgatcagagattcttgacagtcgatgtactctat
tacggcgacaactctcttgatgacagagagattctgacgttcctggagaaggagatcgat
ggatgtatctgctccattcataagtttgctggtaacaagcaagactgtgatgagaaggag
aagtggggtagggttacctttcggactccggagtctgctatgaaggcaacagagattcaa
aagtttgatctcaacggatcagtgattaaactatttccatcgctgtcagctggtggtgaa
ggagttttcaagatgccttctgttacagctatgattcgttggccgcaaagggaaagttgt
ggtaaaggtgttcttaagtgtgcttctggtgatattcacagtatctttgctgggtcatcc
ggcatcatgataggaacaaaatattgcccctttgagacggatcaaagacacactgattct
attttgattactggtattgacacaaatctttcggatgctgaagttttagatgttttggag
ttcgctacgcagagaacagatttggaatttttcttattcagaagaggaaatattgtgcat
tgtcaagatcttactgtttgtaaagatatgctgcataagagaatatttgcgcgcttgtca
tcgaggaatccagacccaaagtgtgttgaagtcaaagtctttgaaccaaaagaagctaat
tttgtgcgagcgttgattacttttgatgggagattacatctggaagctgcaaaagctttg
caggagttagatggaactattctagatggatgctatccatggcagaagataaaatgcgag
caaaagtttcagagctccataatctgtcctgcttttatctacaacatagtcagaagacaa
ttatatgctaagctagcaagcttcaagagacaaagaaaatgtgaatggcatctggaggca
attcatagtggtgcttatcgtgttaaaatctccgcaaatgcaacaagacgcatctcggag
atgcggagatctctcgaagaactcataagaggaagacccataataaaccatccaggctta
accccaagggtcttgcagcatcttttgtccagagaaggtgttatcctgatgcggaagatc
caacaggagactgaaacttgcattgtggtagacaggcagagtctcgcagtacgcatttgt
ggatcagaagagagaaccgctgcggctgaacaagagctggttcggtcgcttctggcttat
cacgagagcaagcagcttgaaatccgcctccgaggtccgaatctccgtcctgatctcatg
aaggaagttgtgaatcggtttggtccagagctccaaggtattaaagagaaggtgaatggt
gtggatctcaagctcaacactcggaaccatgttattcatgttcatgggagcgtggagatg
aggcaggaagtagagaagatggtctatgaacttgcacgggaagaaggtagtgcactgggc
ggtactaaaccagatgagattgaagttgaatgccctatttgcttgtctgaggttgaggat
ggctactctctcgaagcatgttcacacctcttctgcaaagcttgtttgttggaacagctc
gaggcgtcgatgagaaactttgacgcatttcccataatctgttctcacatcgactgtgga
gctcctatagtacttgctgatatgagagccctcttatcacaagagaagctcgacgaactc
ttcagagcatccctctcctcttttgtaacaaccagcgatggtgagttccggttctgctcc
acacctgactgcccttccatctaccgcgttgccggtcctctagattcaggggagccattt
ttctgcggagcgtgtaactcacagacgtgcacgaggtgccacctggagtatcacccgtac
atcacttgcgaaaggtacaaactgttcaaggaggatcctgacatgtcgttgaaggactgg
gcgaaagggaagaacgtgaaggagtgtccgtgttgcaagtcgacgatagagaaatctgaa
gggtgtaaccatctgctgtgccggtgtgggaatcacatttgctgggtctgcttaaggtgg
ttcgctcaacaagaaccttgttatgaacatttgagaggagtccatggtgggataggcctc
ttcgatgagctaggcatgcccatgctttga

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