KEGG   Brassica napus (rape): 106430324
Entry
106430324         CDS       T04128                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
bna  Brassica napus (rape)
Pathway
bna03082  ATP-dependent chromatin remodeling
bna03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    106430324
   03083 Polycomb repressive complex
    106430324
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:bna03036]
    106430324
Enzymes [BR:bna01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     106430324
Chromosome and associated proteins [BR:bna03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     106430324
   HDAC complexes
    Sin3A-HDAC complex
     106430324
    BRAF-HDAC complex
     106430324
    REST complex
     106430324
    SHIP complex
     106430324
    MiDAC complex
     106430324
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     106430324
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    106430324
  Chromatin remodeling factors
   NuRD complex
    106430324
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 106430324
NCBI-ProteinID: XP_013726568
UniProt: A0A816SJH8
Position
C3:complement(51116230..51119636)
AA seq 426 aa
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEM
AQFHSPDYVEFLQRINPENKDLFPNEMARYNLGEDCPVFEDMFEFCQIYAGATIDAARRL
NNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLRDGIDDSSFNRLFRA
IISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNIPLLVTGGGGY
TKENVARCWTVETGILLDTELPNEIPDNDYIKYFGPDYSLKIPGGHIENLNTKSYISTIK
AQILDNLRYIQHAPSVQMQEVPPDFYIPDFDEDERNPDVRVDQRSRDKQIQRDDEYFDGD
KDNDAS
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgcggtccaaggacaaaatctcctacttttacgatggagatgtagggagcgtttatttt
ggtccgaatcacccaatgaaacctcacaggctttgtatgacccatcatcttatccttgca
tatggcctccatagcaagatggaagtttatcgtccacacaaggcataccctatcgagatg
gcccagttccattctccagactatgtcgagttcctgcaacgaatcaacccagaaaataag
gatttgtttcccaacgaaatggctagatataatttaggagaggattgtcctgtctttgag
gatatgttcgagttttgtcaaatttatgcgggtgcaaccatagatgctgcacgcagatta
aacaacaaactctgtgacattgcgataaactgggcgggcgggttgcaccatgctaaaaaa
tgcgatgcatctggtttttgttacatcaacgatctcgtactaggaatcctcgagctgttg
aaacaccatcctcgtgtgctctacattgatatagacgttcaccacggtgatggagttgaa
gaggctttttactttactgacagagtgatgactgttagttttcacaagtttggggataag
ttctttccagggaccggcgatgttaaggaaataggagaaagggaagggaagttttacgcc
ataaatgttccgctcagggatgggattgatgacagtagtttcaaccgtctgttcagggca
ataatttcaaaggtggttgagatatatcagccaggtgcaatagtacttcagtgtggagca
gattcactagcaagggatcgactaggatgctttaatctctctattgatggacatgctgaa
tgtgttaaattcgtcaagaaattcaatattcctttgctggtgactggaggtggagggtac
acaaaggagaacgtagctcggtgttggaccgttgagactggcattcttttggacacagaa
cttcctaatgagattcctgataatgattatataaagtattttgggccggattattcattg
aagattcctggtggtcacattgagaatctaaatacgaaatcgtatatcagtacgataaaa
gcacagattttggataatttgagatacatccagcacgctccaagcgtgcagatgcaggag
gttccaccggatttctacataccggattttgatgaagacgaacgaaatccagatgtgcgt
gtggaccagcgttcgcgggataagcagattcagagggacgatgaatatttcgatggtgac
aaggataacgatgcgtcgtag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

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