KEGG   Brassica napus (rape): 106434706
Entry
106434706         CDS       T04128                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
  KO
K12598  ATP-dependent RNA helicase DOB1 [EC:5.6.2.6]
Organism
bna  Brassica napus (rape)
Pathway
bna03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106434706
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:bna03019]
    106434706
   03041 Spliceosome [BR:bna03041]
    106434706
   03009 Ribosome biogenesis [BR:bna03009]
    106434706
   03016 Transfer RNA biogenesis [BR:bna03016]
    106434706
Enzymes [BR:bna01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     106434706
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    TRAMP complex
     106434706
Spliceosome [BR:bna03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    106434706
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    106434706
Ribosome biogenesis [BR:bna03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    106434706
Transfer RNA biogenesis [BR:bna03016]
 Eukaryotic type
  tRNA degradation factors
   TRAMP complex
    106434706
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk ResIII Helicase_C ATPase_2 nSTAND3 Mt_ATP-synt_D
Other DBs
NCBI-GeneID: 106434706
NCBI-ProteinID: XP_013731016
Position
C9:16708217..16713195
AA seq 991 aa
MGSVKRKSVEESSDCAPPQKLQREDDDSTQIINEELVGCVHDVSFPENYLPPAPSAQGDN
KPPAKEFPFTLDSFQSEAIKCLDNGESVMVSAHTSAGKTVVASYAIAMSLRENQRVIYTS
PIKALSNQKYRDFKEEFSDVGLMTGDVTIDPNASCLVMTTEILRSMQYKGSEVMREVAWI
IFDEVHYMRDSERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVHKQPCHIVYT
DYRPTPLQHYVFPAGGSGLYLVVDEKAKFHEDSFQKSLNALVPANDADKKRENGKSHKGL
MLGKLGEESDIFKLVKMIIQRQYDPVILFSFSKKECEALAMQMSKMDLNSDDEKDSVETI
FTSAIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAGRRGIDKRGICILMVDEKM
EPAVAKSMLKGSADSLNSAFHLSYNMLLNQLRSEDGDPENLLRNSFFQFQADRAIPDLEK
QIKALLEERDSMVIEEEESLKKYYNLILQYKSLKKDIREIVFSPKYCLPFLLPNRAVCLD
CANDAGEPQSFSIEDQDTWGVIMKFNKVKSLSEDDDNRRPEDANYTVDVLTRCLVSRDGA
GKKKMRPVPYKERGEPVVVSVPLSQIKSLSSAIMNIPKDYLQLEARENALKKVSELLSRH
PDGIPLDPEVDMKIRSSSYKKTVRRLEAVENLFEKYKIAKSPLIAEKLKVLHMKEELTAK
IKSLKKAVRSSTALAFKDELKARKRVLRRLGYITSDGVVELKGKVACEISSAEELTLTEL
MFSGVFKEAKVEELVSLLSCFVWRERLPDAAKPREELDLLFIQLQDTARRVAEVQLDCKV
DIDVESFVHSFRPDIMEAVYAWAKGSKFYEIMEIARVFEGSLIRAIRRMEEVLQQLIVAA
KSIGETELEGKLEEAVSKIKRDIVFAASLYL
NT seq 2976 nt   +upstreamnt  +downstreamnt
atgggctcggtgaagagaaaatcagtggaggaatcttcagattgtgctccgccgcagaag
cttcagagagaagatgatgattccactcagatcatcaacgaagagctcgtgggctgcgtt
cacgacgtctccttccctgaaaactaccttcctcctgctccctctgctcaaggagacaac
aagccaccggccaaagagttccctttcaccctcgactccttccagtctgaagctatcaag
tgtctcgataatggcgaatcagtcatggtctcagctcatacatcagctggtaaaacagtt
gtggcatcctatgctatcgccatgtccttgagggagaaccagagggttatttacacctct
cctataaaggcattgagcaatcagaagtacagagatttcaaagaagagttttctgacgtt
ggtttgatgactggggatgtcacaattgatcctaacgcctcttgtctggtcatgaccaca
gagatcttgcgtagcatgcagtataaagggtcagaggtaatgagggaggtggcttggatt
atttttgatgaggtgcattacatgcgtgatagtgaaagaggtgtggtttgggaagagagt
attgttatggctcccaagaattctcgttttgtgtttctctctgcaactgttcctaatgcc
aaggagtttgctgattgggttgcaaaggttcacaaacaaccatgccatattgtttacact
gattatcggccaacaccacttcagcactatgtattccctgccggaggaagtgggctttac
ttggttgtggatgaaaaggctaaattccacgaggatagcttccagaagtctcttaacgca
ttggttcctgctaatgatgctgacaagaaaagagagaatggaaagtctcataaggggttg
atgcttggaaaacttggtgaagaaagtgatatcttcaaattggtgaagatgattattcag
cggcaatatgatccggtgattttgtttagtttcagcaaaaaggaatgtgaggcacttgct
atgcagatgtctaagatggacttaaacagtgacgatgagaaagattccgtggagacaatc
tttactagtgcaatcgatatgctttcagatgatgataagaagctacctcaggtttcaaat
attttacctatcttaaaacgtggtataggcgttcatcattcgggtctgcttcctatcttg
aaagaagtgattgagatattgtttcaagaaggtctgattaagtgtttgtttgcaacggag
acatttagtattggattgaacatgccggcaaagacggttgtgttcacaaatgtgcgcaag
ttcgatggagacaagttccggtggttatctagtggtgagtacattcagatgagtggtcgt
gctggacgtcgaggtattgacaaacgaggtatctgcatcctcatggttgatgagaagatg
gaacccgcggttgctaaatcaatgctcaaaggaagtgctgattctttgaacagtgccttc
catttgagctataacatgcttctaaaccagttgcggagtgaagatggtgatcctgagaat
cttctccgcaactcattctttcagtttcaagctgaccgtgctatccctgatctcgagaag
caaataaaagccctcctagaagagagagactctatggtgattgaagaagaagaaagcttg
aagaaatactataacttgattttgcaatataagagtctgaagaaggatatacgtgaaatt
gtgttctctccaaagtactgcttaccctttttgctgccaaacagagctgtttgtctagat
tgcgctaatgatgctggagagccacaatcattcagcattgaagatcaggatacctgggga
gtgataatgaaattcaacaaagtcaaaagcttatctgaagatgatgataatagaagacca
gaggatgcaaactacaccgtagatgtactgactagatgtttggtcagcagagatggtgct
ggcaaaaagaaaatgaggcctgtgccatataaagaacgtggtgagcccgttgtggtctct
gttcctttatctcagattaagagtttaagcagtgcaatcatgaatataccgaaagattat
ttacaacttgaagctagagagaatgctctgaagaaggtttccgagttgctctctagacat
cctgatggaatacccctagatcctgaggttgatatgaagattcggagcagctcatacaaa
aagactgttcggcgattggaggctgtggaaaacctatttgaaaaatacaaaatagcaaaa
tctcccctcatagcagagaagctgaaagttctacacatgaaggaagaactaacagccaag
atcaaatcacttaagaaagctgtccgatcctcaacagcgttggcgtttaaagatgaactt
aaggccagaaagcgtgttttacgaaggctaggatatatcaccagcgatggtgttgtggag
ttgaaggggaaggttgcatgtgaaatcagtagtgcagaagagttgacattaacggagcta
atgttcagtggtgtcttcaaggaagcaaaggtggaggagttggtttctctcctctcttgc
tttgtgtggcgagagaggctccctgacgcagccaaacccagagaagaactcgacttgctc
ttcatacagttacaagacacagccaggcgtgtcgctgaagttcagctcgactgcaaggtg
gatatcgatgtggagagttttgtgcactcgttcagaccggatataatggaggcggtgtat
gcgtgggcaaaagggtccaagttttacgagatcatggagattgctcgtgttttcgaaggg
agcttgatcagagcgataaggagaatggaggaagttctgcaacagctcatagtggctgca
aaatccattggagaaacagagcttgaaggtaaactagaagaagctgtttccaagatcaag
agagacattgttttcgcagcatctctctacttgtga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (9)   
   Pfam (9)   
All databases (23)   

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