KEGG T04128: 106440848

Brassica napus (rape): 106440848

Entry

106440848         CDS       T04128

Name

(RefSeq) DNA mismatch repair protein MSH3

K08736

DNA mismatch repair protein MSH3

Organism

bna Brassica napus (rape)

Pathway

bna03430

Mismatch repair

Brite

KEGG Orthology (KO) [BR:bna00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03430 Mismatch repair
    106440848
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:bna03400]
    106440848
DNA repair and recombination proteins [BR:bna03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    Mismatch and loop recognition factors
     106440848

SSDB

Motif

Pfam:

MutS_V MutS_III MutS_I MutS_II MutS_IV

Other DBs

NCBI-GeneID:

106440848

NCBI-ProteinID:

XP_013738066

Position

A3:complement(26772372..26777864)

AA seq 1098 aa
MGKQKQQVISRFFAPKPKPSPPPNQESSTPPPKISATVSFSPSKRKLLSDHLAAASPKKP
KPSQNPTPKPDPNLHRRFLQRFLEPPPEEESLPVTTSIKYTPLEQQVVELKSKHPDVILM
VEVGYRYRFFGEDAEIAARVLGIYAHMDHSFMTASVPTFRLNVHVRRLVNAGYKVGVVKQ
TETAAIKSHGANRAGPFFRGLSGLYTKATLEAAEDISGGCVGEEGFGGQSNFLVCVVDER
VDRESNKGCGLEASFDVRVGVVGVEISTGEVVHGEFNDNFMRSGLEAVVLSLSPAELLLG
QPLSQQTEKFLLGYAGPTSNVRVERAALDRFRNGSAVDEIVSIYEDLSARNIEDDKENKV
EAAEEKISRLTVHTIMNMPHLTVKALALTLRHLKQFGFERILFEGASIRSLSSTTEMTLS
ANTLQQLEVIRNNSDGSESGSLFHNMNQTLTVYGSRLLRHWVTHPLCDRNLISARLDAVS
EIVACMGSPSSSQASDELDEQSSERKIVPSEFYHVLSSVLTALSRSPDIQRGITRIFHRT
AKATEFIAVIEAILLAGKQLQRLGIKQYCETRSMQSATVRSSLLRKLISVVSSPAVVDNA
AKLLSALNKEGAARGDLLDILITSSNQFPELAEARQAVLAVREKLDSLIVSYRKKLANRN
LDFLDVSGITHLIEVPVDAKVPINWVKVNSTKKTIRYHPPEIVAGLDELALATEHLAIVN
RASWDSFLKSFAGYYIDFQAAIQALAALDCLHSFATLSRNKNYMCPLFVDDSEPVEINIQ
SGRHPVLETILQDNFVPNDTSLHAEGEYCQIITGPNMGGKSCYIRQVALISIMAQVGSFV
PASFAKLHVLDGVFTRMGATDSIQHGRSTFLEELSEASHIIRTCSSRSLVIIDELGRGTS
THDGVAIAYATLHHLLVEKRCLVLFVTHYPEIAEISNSFPVSAGTYHVSYLTSQKDNGGS
DHDNVTYLYKLVRGLCSRSFGFKVAQLAQIPPSCIDRAITMAANLEAEVRARERKTVSSV
KHLMESPGKPKAHAEPPESRTEESMSVLGDLFADLRCALSEDDPSKSFKLLKDAWKIAED
LVARQKYLCINKNIPRER

NT seq 3297 nt +upstreamnt +downstreamnt
atgggcaagcagaaacagcaggtgatttctcgattcttcgctcccaaacccaaaccctca
ccgccgccgaatcaggaatcgtcaacaccgccgccgaagatttccgccaccgtctccttc
tccccttccaagcgaaaacttctctccgatcatctcgccgccgcgtcacccaagaagccc
aaaccatctcaaaaccccacacccaaacccgaccccaatctacaccgaagattcctccag
agattcctagaacctccaccggaggaagaatctctccccgtaacaacctcgattaagtac
acgccgttggaacagcaggtggtggagctgaagagtaagcacccggatgtgattctgatg
gtggaagttggttacaggtatagattcttcggagaagacgcggagatagcagcgcgtgtg
ttgggcatttacgctcatatggatcacagcttcatgacggcgagcgtaccgacgtttcgg
ctcaatgtccacgtgaggaggctggtgaatgcagggtacaaggttggtgtggtgaagcag
accgaaactgcggctattaagtcccacggagcgaaccgggccggtccgtttttccgtggc
ttatcgggtttgtatactaaagcgacgcttgaggcggctgaggatataagtggcgggtgt
gttggtgaagaaggttttggtggtcagagtaatttcttggtttgtgtagtggatgagaga
gttgatagggagagtaataaaggttgtggtttggaagcgagttttgatgttagagttggt
gttgttggcgttgagatttctactggtgaagttgttcatggagagtttaatgataatttc
atgaggagtgggttagaggctgtggttttgagcttatctccagctgagttgttgcttggc
cagcctctttcacagcaaactgagaagtttctgttgggatatgctggacctacttcaaac
gttcgagtggaacgtgccgcactggatcgtttccgcaatggtagtgcagtagatgagatt
gtttcaatatatgaagatctcagtgcaagaaacatagaagatgataaagaaaacaaggtg
gaggctgctgaagagaaaatatctcgcttgacagttcatacaattatgaacatgccacat
ctgactgttaaagcccttgccctgacactgcgccatctcaaacagtttggatttgaaagg
atccttttcgagggagcttcaattcgctctttatcaagcaccacagagatgactctctca
gccaatacactgcaacagttggaggttataagaaataactcagatggatcggagtctggc
tctttattccataatatgaaccagactcttacggtatatggttccaggcttcttagacac
tgggtgactcatcctctttgcgatagaaatttgatatcggctcgccttgatgctgtttct
gagattgttgcatgcatgggatctcctagttcttcccaggccagcgacgagttagatgaa
caaagttctgagagaaaaattgtaccatctgagttttatcatgtgctctcctcagtcttg
acagccttgtctagatcacctgatattcaacgtggaataacaagaatctttcatcggact
gctaaagccacagagttcattgcagttatcgaagctattttacttgcggggaagcaactt
caacgccttggcataaagcaatattgtgaaacgaggagtatgcaatccgcaactgtgcgg
tcttctcttttgagaaaattgatttcggttgtttcgtcccctgctgtggttgacaatgcc
gcgaaacttctctctgccctcaacaaggaaggggctgctcgaggagacttgctcgacata
ctaatcacttctagcaaccaatttcctgagcttgctgaagctcgccaagcagttctagct
gtcagggaaaagctagattccttgatagtttcatatcgaaagaagctcgcgaatcgaaat
ttggattttcttgatgtgtctgggatcacgcatttaatagaggtgcctgttgatgccaag
gttcctatcaattgggtgaaagttaatagcaccaaaaagactattcgatatcacccccca
gaaatagtagctggactggacgagctagctctagcaacagaacatcttgctatagtgaac
cgagcttcatgggatagttttctcaaaagttttgctggatactatattgattttcaggct
gccattcaagctcttgctgcgctggactgtttgcactcctttgcaactctatctagaaat
aagaactatatgtgtcctttgtttgttgatgacagtgaaccagttgagataaacatacag
tctggtcgtcatcctgttttggagactatattacaagataacttcgtcccaaacgacaca
agcttgcacgcagaaggggaatattgccagattatcactggacctaacatgggaggaaag
agctgctatatccgtcaagttgctttaatttccataatggctcaggttggttcctttgta
ccagcttcattcgccaagctgcacgttcttgatggtgttttcactcggatgggtgctaca
gacagtatccagcatggtcgaagtacttttctagaggagttaagtgaggcctcgcacata
atcagaacctgctcttcacgttcgcttgttataatagatgagctcggaagaggcactagc
acacatgacggtgtagccattgcctatgcaacactacaccatctcttagtagaaaagaga
tgtttggttctttttgtcacgcattaccctgaaatagccgagatcagtaacagtttcccg
gtttctgctggtacataccatgtctcgtatctgacatcacagaaggataatggcgggtct
gatcatgataatgtgacctacctatataaactcgtgcgtggcctttgcagcaggagcttt
ggttttaaggttgctcagcttgcccagatacctccatcatgtatagatcgagccattacc
atggctgcaaatttggaagctgaggtacgtgcaagagagagaaaaacagttagtagcgta
aagcatctcatggagtcaccggggaaaccaaaagcacatgctgaacccccagaatctcgc
accgaagaatctatgtctgttttaggtgacttgtttgcagacctgagatgtgctctctct
gaagacgacccttcaaaatcattcaagttgttaaaagatgcttggaagattgcagaagat
ttagtagcaaggcaaaaatatttatgtattaacaagaacatcccaagggagagatga

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (15)   

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