KEGG   Brassica napus (rape): 106445608
Entry
106445608         CDS       T04128                                 
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1
  KO
K12813  pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:3.6.4.13]
Organism
bna  Brassica napus (rape)
Pathway
bna03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106445608
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:bna03041]
    106445608
Spliceosome [BR:bna03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP related factors
    106445608
 Complex C
   U4/U6.U5 tri-SnRNP related factors
    106445608
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD AAA_22 AAA_19 AAA_30 nSTAND3 SRP54 T2SSE PWI AAA_16 Flavi_DEAD TsaE
Other DBs
NCBI-GeneID: 106445608
NCBI-ProteinID: XP_048635154
Position
A5:18141165..18148517
AA seq 1046 aa
MASNDLKTWVSDKLMVLLGYSQITLVNYVIVKAKQSKSPAELVGVLMDNGFASSGDTRSF
AEEIFARVPHQTAAVNLYQQREAEAAMLVRKQQTYALIDDDDDDEDEVVKEKKPSASESK
KSSKGKKRFRKKSGQSDDSDEEVPVREDSRHVRRKVSEDEDDGSESEEERVRDQKEKEEL
EQHIRDRDTARTRKLTEQKLSKKEQEEALRRANALEEDDLNSLRKVSRQEYLRKREQKKL
EELRDEIEDEQYLFADEKLTETELREFRYKKELYDLVKKRTQDEDNVEEYRIPDAYDDQE
GGVDQEKRFAVAVQRYKDLDSREKMDPFAEQEAWEDHQIGKARLKFGSKNKKASDDYQFV
FEDQINFIKESVMAGENYEDDMHPKEAQDAAEKTALEELQEVRKSLPIYGYREQLLQAVE
EHQVLVIVGDTGSGKTTQIPQYLHEAGYTKRGKVGCTQPRRVAAMSVAARVAQEMGVKLG
HEVGYSIRFEDCTSDKTVLKYMTDGMLLRELLGEPDLASYSVVIVDEAHERTLSTDILFG
LVKDIARFRPDLKLLISSATMDAEKFSDYXDTAPIFSFPGRRYPVEINFTSAPEADYMDA
AIVTVLTIHVREPLGDILVFLTGQEEIETAEEILKQRIRGLGTKIRELIICPIYANLPSE
LQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLITPI
SKASATQRAGRAGRTSAGKCYRLYTAFNYNNDLEENTVPEVQRTNLASVVLALKSLGIHD
LINFDFMDPPPAEALVKALELLFALGALNKLGELTKAGRRMAEFPLDPMLSKMIVVSDKY
KCSDEIISIAAMLSVGGSIFYRPKDKQVHADNARMNFHTGNVGDHIALLKVYSSWKETNY
STQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEISSNMNELDSVRKSIVAGFFPHTAK
LQKNGSYRTVKHPQTVHIHPNSGLSQVLPRWVVYHELVLTSKEYMRQVTELKPEWLIELA
PHYYQRKDVEDDASKKMPKGAGKAAI
NT seq 3141 nt   +upstreamnt  +downstreamnt
atggcgagcaatgatttgaagacatgggtttcggataagctgatggtgctgcttggctat
tctcaaataactcttgttaactatgtcattgtaaaggctaaacaatcgaagtcaccagct
gaacttgttggagtgttgatggataacggatttgcttcttctggagatactcgttccttt
gcggaagagatttttgctagagttcctcatcaaactgctgcggtgaatctttaccaacaa
cgggaagcagaggcagcaatgctagtgaggaagcaacaaacatatgctcttatagatgat
gatgatgatgatgaagacgaagtggttaaggagaaaaaaccttcagcttctgaatctaag
aagtcatctaagggcaagaaaaggtttagaaagaaaagtgggcagtcagatgacagtgat
gaagaggtgcctgtaagagaggacagtagacacgttcgaagaaaggtttctgaagatgag
gatgatggttctgagtcagaagaggaaagagtgcgtgaccaaaaggagaaagaagaactc
gagcagcatataagagatcgtgatactgcacggacacgaaagctaacggagcaaaagttg
tcaaagaaagagcaagaggaggctcttcgaagagcgaacgctttggaggaggatgattta
aactctttaaggaaagtttcaagacaagaatatttgaggaagagggaacagaagaaactg
gaagaactaagggatgagatagaagatgaacaatatcttttcgcagatgaaaagctcaca
gaaacagagcttcgtgagtttagatacaagaaagagctttatgatctggtgaagaaaaga
acacaagatgaagataacgtagaggagtatagaattccagatgcttatgatgatcaagag
gggggtgttgatcaggagaagagatttgctgttgctgtgcaacgatacaaggatctggat
tcaagggagaagatggatccatttgcagagcaagaagcttgggaggaccatcagattgga
aaagcaagactaaaatttggctcaaagaacaaaaaagcctcagacgattatcagtttgtg
ttcgaggaccaaataaattttataaaggaatctgtgatggctggtgaaaattatgaagat
gatatgcatcctaaagaagctcaagatgcggctgaaaaaacagctttagaagaacttcag
gaggtcagaaaaagtctgccaatttacgggtatcgtgagcagttgcttcaggccgtggaa
gagcatcaggttcttgtcattgtgggagacactggttcaggaaagacaacacaaatacca
caatatctccatgaagctggttacacaaagcgcggaaaggttggttgtacacagccccga
agagttgcagctatgagtgttgctgcccgtgttgctcaagagatgggtgtcaaacttgga
catgaggttggctattccattcgatttgaggattgtacttcagataaaactgttctgaag
tatatgactgatggaatgcttttgcgtgagctgcttggggaaccagatctggccagctac
agtgtcgttattgtagacgaggcgcacgaaagaaccttgtcaaccgatatactgtttgga
ttagttaaggatatagcgcggtttcgaccagatttgaagttgttgatatctagtgcaaca
atggatgcagaaaagttttctgattatnttgatacagcgccgatttttagttttccaggg
agaaggtatccagttgaaattaactttacaagtgcacctgaagctgattacatggacgca
gcaatagttactgtgcttactatccatgtgagggagccgcttggagatatattggtcttc
ttaactggtcaagaggaaattgaaaccgcagaagaaatcttgaagcaaaggataagaggt
ttgggtacaaagatccgtgaattaatcatatgcccgatttacgcaaaccttccaagcgaa
ctccaagcgaagatatttgagccaactccagaaggtgcacggaaagtagtcctagcgaca
aacattgctgaaacatcattgacgattgatggtataaagtatgttgttgatcctggattt
agcaagatgaaatcatataacccgagaacagggatggagtctttgctgattactcctatc
tccaaggcttcagcaactcaacgtgctggtcgagctggaagaacaagcgcagggaagtgt
taccgtctgtacacagcgtttaattacaacaacgacttggaggaaaacacggtgccagaa
gtacagaggacgaatcttgcaagtgtggtacttgctttaaagagtcttggaattcatgat
ctcataaactttgattttatggaccctccacctgctgaagcacttgtgaaggctttagag
cttctcttcgctctaggtgctctaaataagctcggtgaattgactaaagctggtagaagg
atggcagagtttccccttgatccgatgttatcgaagatgattgttgtttctgacaagtac
aagtgctcagatgagataatatcaattgctgctatgttgtcagttggagggtctatcttc
taccgtcccaaggacaaacaggttcacgctgacaatgcaagaatgaattttcacactgga
aatgtcggtgaccatattgctttgctaaaggtttacagctcatggaaggaaacaaactac
tctacacagtggtgctatgagaactacattcaggtacggagcatgaaaagagccagagat
atccgtgaccagttggaaggacttctcgagagagtggagatagaaatcagctcaaacatg
aacgaattggattcagttagaaagtccattgtagctggtttcttcccgcacactgcgaag
ctgcagaagaatggatcatatcgaactgtgaagcatcctcagacagtgcacatacatccc
aattcaggcttatctcaggtgttgccaagatgggttgtatatcatgaactagtgctcacc
tccaaggaatatatgcgacaggtaacggagttgaaaccagagtggttgattgagttagct
cctcactactaccagcgcaaggacgttgaagatgatgcatcaaagaaaatgcccaaagga
gctggtaaagctgcgatctaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (15)   
   Pfam (15)   
All databases (26)   

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