KEGG   Brassica napus (rape): 106452458
Entry
106452458         CDS       T04128                                 
Name
(RefSeq) symplekin isoform X3
  KO
K06100  symplekin
Organism
bna  Brassica napus (rape)
Pathway
bna03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:bna00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    106452458
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bna03021]
    106452458
   03019 Messenger RNA biogenesis [BR:bna03019]
    106452458
Transcription machinery [BR:bna03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     106452458
Messenger RNA biogenesis [BR:bna03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     106452458
    U7-dependent histone pre-mRNA processing factors
     106452458
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N HEAT_2 HEAT_EZ
Other DBs
NCBI-GeneID: 106452458
NCBI-ProteinID: XP_013731808
Position
C2:complement(730811..739271)
AA seq 1450 aa
MVGAIMAASSYSYSYSREKLQGLARSAKSATDLPPKLHRLRNLRRNLQGEASVFPAELLP
LLFDLLSDQFGAARKFVAQILGEVGLNYVELLPEIVPLFIKSLQDDTPAVVRQVIASASA
LFRSTLHKFALQGLHSSELDELLQSSWTWMLKLKDEICSLAFKQGNSGVKLCAMKFVEAL
ILLYTPDPSLSLDSQDLSIEASQKLGSLLDQLRHPAAKSLNSSTIIFLINSLSSVAKKRP
AYCGRILPVLLSLDAPSFLKGVHAAAANLALKTVFLSCLECTHPAAAPWKDRLIGALKEI
EGGSRAEKAEDLFYTTNGSIQDKDCVEDTKFQVSVEENSLRANSVVAESNFGRKRSGSEY
NIDLNGDALTGKRSRITPSVSGESTEGLNGNSVGSLPLVTSASTGPSNSRGVSDTGPVQQ
LVAMFGALVAQGEKAIGSLEILISSISADLLADVVMANMHNILLNGSSYADGTDELVMNM
SIVGSDAQIKYPPSFVAGVLSLSTAFPPVAALINPHTPKTENEGEELCVNHVDQPIFPAV
DAVIASGLSASSVNEEGNIELPPNVDYRGNIESGIPGLDSSAQRYVLSEAPVTSVLGSKN
VEAASKNQDTSASGELLLAVIPSVSVDKSEEFSPKATGIGSNSLVSSTATSLASAPQFLL
PKISAPVVNLSDEEKDSLQKLVFLRIVEAYKQVSMSGGSQLRFSLLAHLGVEFPSELDPW
KMLQEHILSDYLSHEGHELTVRVLYRLYGEAEAEQDFFSSTTAASAYESFLVAVAEALRD
SFPPSDKSLSKLLGDSPFLPKSVLKLLESFCCPESGDKVEKDLPSGDRVTQGLSAVWSLI
LTRPGIRNDCLKIALQSAVHPLEEIRMKAIRLVANKLYSLSFITQQIEEFAKDKLFSVVS
CISSERGGAETLSKDCVKPVSGEGMDSSLEATSVTEAQRCLSLYFALCTKKHALFVHVFS
IYKDASDPVKQAIHRQIPILVRTMGSSSELLKIIADPPNGSENLLMQVLQTLTEAAKPSS
ELIHTIRKLFDTRIKDVEIIFPILPFMTRDDVLRVFPHMVNLPMEKFQVALSRVLQGPSQ
SGPVLSPSEVLIAIHSIDPARDGIPLKQITDACNTCFAQRQTFTQQVLASVLNQLVQQIP
LPMLFMRTVLQAIGAFPALSDFILEILSRLVSKQIWKYPKLWVGFLKCAQSTQPQSYKVL
LQLPPTQLGNALTKISSLRAPLAAHASQPDIQSSLPRSTLAVLGLVPDSQGTQTSQVQAS
ETQESQVQASETQESQVQASETQESQVQASETQESQVQASETQESQMQASETQECQGKQQ
ASESQEQTSPSQQVSVPLSHSETDHNQETSQVVASHSQSSPIATGRSETSQSQSSPIGAG
QSEVSQTTQVSDSDPPPAPTSHTQTSDSQVSGQRQPDNEKMEEDTATSENERSEVDKSKE
SSAEEEEEEE
NT seq 4353 nt   +upstreamnt  +downstreamnt
atggtgggagccatcatggctgcttcttcgtattcgtattcgtattcaagagaaaagctc
caaggtctcgcgagatccgccaaatcagccaccgatttgcctccgaagctccaccgcttg
cgcaacttgcgtcggaatttgcaaggagaagcctccgttttccccgcagagcttcttcct
ctccttttcgatcttctctctgatcaattcggtgctgcccgcaagtttgtcgcccagatt
cttggtgaggttggtttgaactatgtggagttattacctgagatagttccccttttcatt
aagtctctccaagatgacacccccgctgtcgtcaggcaggtcatcgcttctgcttctgct
ctcttccgctccaccctccataaattcgcacttcagggtttgcattctagtgagctggat
gagcttcttcaatcttcctggacatggatgcttaagctcaaggatgaaatatgctctttg
gctttcaagcaaggaaacagtggtgtaaagttatgcgctatgaaatttgtggaagcgctt
attcttttgtatacacctgaccctagcctgtctttggactctcaagacttgtccattgag
gccagccagaaattgggttcactgcttgatcagctcaggcaccctgctgctaaatctcta
aatagctccaccattatttttcttatcaatagtctttcatcagttgcaaagaaacgacct
gcatattgtggacgaattctgcctgttctactgagcttggatgccccaagctttctcaaa
ggagtgcatgcagcagcagcaaatcttgccctcaagactgtttttctctcctgcttggaa
tgtacacatccggctgctgcaccgtggaaagaccggttgatcggtgctctgaaagagata
gaaggtggcagtcgggcagagaaagctgaagatctgttttacacaactaacggaagcatt
caagacaaagactgtgtagaggatacaaagtttcaggtatcagtggaagagaattctctc
cgtgcaaattctgttgttgcggaaagtaactttggtaggaaaagatctggatcggaatac
aatattgatctaaatggagatgctttgactggaaaacgatcaagaataacaccttctgtg
tcaggagaatctactgaaggattaaatggtaacagtgttggctctctacctctggttact
tctgcttcaactggaccaagtaatagcagaggagtaagtgatactggacctgttcagcaa
ctggttgctatgtttggagcattggttgcccagggtgaaaaagcaattggatctctagag
atccttatttcaagtatttctgcggatctgctggccgatgttgtgatggctaatatgcat
aatattctactaaatggttcctcttatgctgatggcaccgatgagctggtgatgaacatg
tctatagttggtagtgatgcacaaattaaatatccaccatcgtttgtggctggtgttctt
tcactgtcaactgcattcccaccagttgctgccctgataaatcctcacacaccgaaaacg
gaaaatgaaggtgaagaactctgtgtgaatcatgtggaccagccgatatttccggctgta
gatgcagttattgcaagtggcttatcagcctcttcagtaaatgaagagggcaatattgag
cttccaccaaatgtggattacagagggaatatagaaagtggtatacctggactagattct
tctgctcaacgttatgtgttatcagaagcccctgttacttctgtattgggttcgaaaaat
gtggaggccgccagcaagaaccaagatacgagtgccagtggagaacttcttctcgctgtg
attccatcagtgtcagtggataagtctgaggagtttagtccaaaggcgactggcataggt
tctaacagcttggtttcctcaacggcaacttcacttgcttctgcgcctcagtttctcttg
cctaagatatcggcacctgttgtcaacctttctgatgaagagaaagacagtttgcagaag
ctggtgtttttacgcattgttgaagcatataaacaagtatcaatgtctggtggctcacaa
cttcgcttttctcttcttgctcacttgggagttgagtttccttcggagttggacccttgg
aaaatgttacaggaacacattctctctgattatttgagtcatgagggacatgagttgact
gtgcgggttctctacaggctatacggggaggcagaagcagaacaagatttcttctcgtca
actactgctgcgtctgcatatgaaagtttcttggtggctgtggctgaagcacttagagat
tcttttccaccgtctgataaatcgttaagtaaattgctcggagattctccatttctgcca
aaatcagttctgaagttgttggaatcgttttgctgtcctgaaagtggtgacaaggttgaa
aaggacttacctagcggagaccgtgttactcaaggcctcagtgcggtttggagtctgatt
ttaacgagacctggaatccggaatgactgcctgaagattgctttgcagagtgctgttcac
cccttggaagagattcgcatgaaagcaatccgcctggtggcaaacaagctctattcttta
tcattcattacacaacagattgaggaatttgcaaaggacaagctattttccgtagtgagt
tgcatttcttcagagagaggaggtgctgaaacgttgagcaaggattgtgtaaagccggtg
agtggtgagggcatggattcgtccttagaagcaacttcagtaaccgaagcccaacgctgc
ttgtcactctattttgcactatgtaccaagaagcacgccctttttgtccatgtgttcagc
atttacaaagatgcatcagatcctgttaagcaggctatccatcgtcaaatcccaatacta
gttcgtaccatgggctcatcatccgagcttcttaaaattatagcagacccaccgaatgga
agtgagaaccttctaatgcaggttcttcaaaccctcactgaggcggctaagccttcttca
gagttgatacataccataagaaagttgtttgatacaagaataaaggatgtagaaattatt
ttcccaatattgccgttcatgacaagagacgatgttctacgtgttttccctcatatggtc
aatcttcctatggagaaattccaagtcgcactctctcgtgtcctgcagggaccatctcag
tctggtccagtgctttctccatcagaagttttaattgctatccatagcattgacccagcg
agagacggaataccgcttaaacagatcacagatgcatgcaatacctgtttcgcacagagg
cagacattcactcaacaggttttagccagcgttctgaaccaactggtccagcaaattcca
ctgccaatgttattcatgcgtacagttctacaagctatcggtgcttttccagctctgtcc
gactttatcctggagatcctttctcgtctcgttagcaaacagatatggaaatatccaaaa
ctgtgggtaggattcttgaaatgtgcacagtcaacacagcctcaatcatacaaggtctta
ctacagcttcctccaactcagctgggaaatgcattgactaaaatctcatccttaagagct
cctctggcggcgcatgccagccagccagatattcagtcttcacttccgagatctacattg
gctgttcttggacttgtccctgattctcagggaacacagacgagtcaagtacaagcaagt
gaaacacaagagagtcaggtacaagctagtgagacacaagagagtcaggtgcaagcgagt
gagacacaagagagtcaggtgcaagcgagtgagacacaagagagtcaggtgcaagcgagt
gaaacacaagagagtcagatgcaggcgagtgaaacacaagagtgtcagggaaagcagcaa
gcaagcgagtcacaagagcaaacgagcccgtctcagcaagtctctgtacctctgagtcac
tctgaaacagatcataatcaggaaaccagtcaggtggttgccagtcattctcaaagcagt
cctatagctacgggccggtcagagacgagtcagtctcagagcagtcccattggtgcgggg
cagtctgaagtgagtcagaccacccaagtgtcggactcggatcctcctccagcaccaacg
agccatacccagacatcagattctcaagtgtcaggccagagacagcccgataatgagaag
atggaggaggacacagcaacctcagaaaacgagaggtctgaagttgacaagtcaaaggaa
tcttctgcagaagaagaagaagaagaagagtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (4)   
   Pfam (4)   
All databases (19)   

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