KEGG T02047: BANAN

Bifidobacterium animalis subsp. animalis ATCC 25527: BANAN_07100

Entry

BANAN_07100       CDS       T02047

Name

(GenBank) transcription termination factor Rho

K03628

transcription termination factor Rho

Organism

bni Bifidobacterium animalis subsp. animalis ATCC 25527

Pathway

bni03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:bni00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BANAN_07100
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bni03021]
    BANAN_07100
   03019 Messenger RNA biogenesis [BR:bni03019]
    BANAN_07100
Transcription machinery [BR:bni03021]
Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     BANAN_07100
Messenger RNA biogenesis [BR:bni03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     BANAN_07100

SSDB

Motif

Pfam:

ATP-synt_ab Rho_RNA_bind Rho_N PIP5K Spore_III_AA SAP

Other DBs

NCBI-ProteinID:

AFI63622

Position

complement(1724912..1726915)

AA seq 667 aa
MKLPELKEIAKELGLRGLSAKRKGDLVAAIEEARAKQSSAKSETAPAQPEQPAGHDDAVS
VPVRKTGARRVVRKAGEPKAAEESAAEQPAQVKEEGHAVLPAEEEMTQIRGRRVRGKRRQ
MESVDQAATNGETSAAEHLLSTLNLPEHAERGGEQPRRRRGAVDSLPTRRRAGAAAVREP
DAEAKPDLDDILSSLPLSANDGEGDERHEEHAHRRAERGSRTNDRSNARADRENRQHRRN
RNDRDYEEREEGNERRSRDERGNNRNERNNRNDRNERREENTEDLVEVGGIVDVLDSYAF
IRTSGYLPGPNDIYVSMGQIKKYGLRKGDAVRGYTRAPHEGERRNQRQKFMPLQSITLIN
GLSVEEAQDRPNFSKLTPLYPDERLRMETTPNRIIGRLIDIVSPIGKGQRGLIVSPPKAG
KTITLQNIANAIAVNNPEVHLMVVLVDERPEEVTDMERTVKGEIISSTFDRPASDHTIVA
ELAIERAKRLVELGQDVVVLLDSMTRLARAYNIAAPASGRILSGGVDAQALYPPKKFFGA
ARNIENGGSLTIISSALVETGSKMDEVIFEEFKGTGNMELRLSRELADKRLFPAVDINAS
GTRREELITNPQELPVLYSLRRLLGGLEPEQAYQTLVPRLKKTMTNADFFKAIVQQGNSS
LNGGSNN

NT seq 2004 nt +upstreamnt +downstreamnt
atgaagctgcctgagctcaaggagatcgccaaggaacttggcttgcgcggtctttctgcg
aagcgcaagggcgacttggtggcagcgatcgaagaggcccgcgccaagcagtcgtcggcg
aagagcgaaacggcaccggcacagccggaacagcccgcagggcacgatgatgcagtctcc
gttccggttcgcaagaccggtgcccgacgcgtggtgcgcaaggccggcgagccaaaggca
gccgaggagtctgctgccgaacagcctgcccaggtgaaggaggagggccatgccgtcctg
cccgccgaagaggagatgactcagattcgcggtcgccgcgtgcgcgggaagcgccgtcag
atggaatctgtggatcaggctgcgaccaatggtgagacgtccgccgccgagcatctgctg
agcacgctgaatctgcccgagcacgcggagcgcggcggtgagcagccacgccgtcgtcgc
ggtgccgtggactcactgcccacgcgacgtcgtgcaggagcggcggccgtgcgtgaaccg
gatgcggaagccaagccagatcttgacgacattctctcgtcattgccgctgagtgcgaat
gacggcgagggtgacgaacgtcacgaggagcatgcgcatcgccgtgccgagcgcggaagc
cgcaccaacgaccgttcgaatgcgcgtgccgacagggagaaccgccagcaccgcagaaac
cgcaacgatcgcgattacgaggagcgtgaggagggcaacgaacgccgttcccgcgacgaa
cgtggcaataatcgcaatgagcgcaacaatcgcaacgaccgcaacgagcgtcgcgaggag
aacaccgaggatctcgtggaggtcggcggcatcgtcgacgtgctcgattcctacgcgttc
attcgcacttccgggtacctgcccggaccgaacgacatctatgtgtcgatggggcagatc
aagaagtacggcctgcgcaaaggcgatgccgtgcgcggttacacgcgcgcgccccatgag
ggggagcgccgcaaccagcgtcagaagttcatgccgttgcagtcgatcacgctcatcaac
ggactgagcgtggaagaggcacaggatcgcccgaacttcagcaaactcacgccgttgtac
cccgacgagcgcctgcgtatggagaccacgccgaaccgcatcatcggtcgcctgatcgac
atcgtctcgccaatcggcaagggccagcgcggcctcatcgtctcgccgccgaaggccggc
aagacgatcacgctgcagaacatcgccaatgcgatcgccgtgaataatcccgaggtgcac
ctcatggtcgtgctcgtcgatgaacgcccggaagaggtcaccgacatggagcgcaccgtg
aagggcgagatcatctcgtccaccttcgaccgcccggcctccgaccatacaatcgttgcc
gagctcgccatcgaacgcgccaagcgcctggtggagctggggcaggatgtggtggtgctg
ctcgattccatgacgcgcctcgcccgcgcctacaacatcgcggcacctgcctcagggcgc
atcctctccggtggtgtggacgcccaggcgctctacccgccgaagaagttcttcggcgcc
gcccgcaacatcgaaaacggcggttcgctcaccatcatctcgtcggccctggtggagacc
ggttcgaagatggacgaggtgatcttcgaggagttcaagggcactggcaacatggagctg
cgtctgagtcgcgaactggccgacaagcgcctgttcccggctgtggacatcaatgcttcc
ggcacccgccgtgaggagctcatcacgaacccgcaggaacttccggtgctgtacagcctg
cgtcgcctgcttggcggtctggagcctgagcaggcctatcagacgctcgtgccgcgcctg
aagaagacgatgacgaatgcggacttcttcaaggcgatcgtgcagcaaggcaacagctcg
ctgaacggcggctcgaacaactga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (14)   

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