KEGG   Brettanomyces nanus: FOA43_001166
Entry
FOA43_001166      CDS       T07002                                 
Name
(RefSeq) uncharacterized protein
  KO
K02999  DNA-directed RNA polymerase I subunit RPA1 [EC:2.7.7.6]
Organism
bnn  Brettanomyces nanus
Pathway
bnn03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:bnn00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    FOA43_001166
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:bnn03021]
    FOA43_001166
Enzymes [BR:bnn01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     FOA43_001166
Transcription machinery [BR:bnn03021]
 Eukaryotic type
  RNA polymerase I system
   RNA polymerase I
    Core subunits
     FOA43_001166
SSDB
Motif
Pfam: RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1 RNA_pol_Rpb1_4 CAT
Other DBs
NCBI-GeneID: 62194567
NCBI-ProteinID: XP_038777416
Position
1:2501412..2506325
AA seq 1637 aa
MDMTKPVGSEITYVDFSVLTTGEIRKLSAKQITNPSAFDSLGHPVPGGLYDLALGAFFRN
NCATCGLSERICPGHQGHIELPVPVYNPMFFSRLFLLSRGSCIYCHHFKIRSIKLHAYEC
KLRLIQYGLILEASQIDKLQVDTDGDDEAVEYNKKSHEAHKLPVSPAESNLLQKRELFVY
ESINAALKDGRTSKGGVYTGAILQARKQLIKEIDKELVAKSRCENCGMHSPKLRNDGYSK
IFANALSPKERDANSTNMSLSGNILEGETSDTVEIASGKGSRYILSTEILGLLKAVFTVE
QPLVKCLFHSRPDTPKLVSADMFFLHVLVVPPTRFRMPQRLGDEVHENTQNELLSKVLTT
SLLIKDLNEQFLGLQKDITGEEEKKLIFNRLMNAFVTLQNDVNGFIDSSKNQNAGPSQTL
LPGIKQALEKKEGLFRKHIMGKRVNFAARSVISPDPMIETNEIGLPPVFATKLTFPEPVT
CYNVAEMRQCVINGPDKWPGATEVRDENGTISLVGMNEEQRQAVAKQLLTPSGEGNGVVN
KQVLRHIRNGDVVIMNRQPTLHKASMMGHRVRVLPNEKTLRIHYANGGPYNCDYDGDEMN
LHFPQGELARAEAYNLANTDSQYLTPTSGSPVRGLIQDHLSTGVWLTNKETFFTREKYQE
LVYGCLRPEHNGHGFGSGSWRVKTLPPTIFKPVQLWSGKQVISSVLLNIRPAHLPGVNLE
SKNKIKNEYWGEGSHENEVIFKNGQLICGILDKSQYGSSKYGIIHAIHEAYGPDTAQRAL
SSLGRLLTNYEQWIAFTCGMDDLELTTSGNTDRDRILSKAKEVGRKAAADVTNLDEDIPV
TNPEFHKRLEEVLRDDEKHAILDAVTMSKVNAITTEVVESCVPAGTVKKFPQNSMQAMAL
SGAKGSNVNVSQIMCLLGQQALEGQRTPVMVSGKTLPCFKPFDTDARAGGYIKNRFFSGI
RPQEYYFHCMAGREGLIDTAVKTANSGYLQRCLTKQLEGVHVGYDNTVRNADGSLIEFLY
GGDAVDVVKESYLFKFNFFYENYQALLQKYSPSNIDNLDSETAVHYSKKFRKELKRQADV
PAWKQSYDHDPTVSLFNPSRYLGSVSTRFEEELDKFIEQNKSLFKKHSETGVSSKKFKAL
MQLKYMRSLIDPGEAVGIIASQSIGEPSTQMTLNTFHFAGHGAANVTLGIPRLREIVMTA
SSSIKTPQMTLPLLTDVDEPAADAFCKTISRLTLSAFIDDVTVTEITADPNQPESRRSYE
IRLKFFDSKDYKEEYDLTKEELEIVVSDEFLAMLESEIVKEIRKQKKVVEELQDIGHAVE
SKSDEVDGAPLGSLDDDYSAQKEKSKSKQSASYDGPDDDELEAIRKAEKSDSDTGADSSI
DISSDEDDDMQDDDDEPIDVSKKTQLKGNSHLDMSKEAIKRELKVIDSHEFISEFNFDDD
SGKWCQFKLELSGDTEKLLMVNIVEEMCKKCVVRSVAHIDRCLHEEGSRDLVTEGVNFQA
MWEHDSFIDVNAIRSNDIAAVLHVYGVEAARNTIVNEVINVFGRYAIEVSSRHLDLIADY
MTRDGSYLAFNRQGIDSCTSDFMKMSYETTCQFLTKAVLNGNREQLESPSARLVIGKLNK
VGTGSFDVLAKMPVRAN
NT seq 4914 nt   +upstreamnt  +downstreamnt
atggatatgacaaagcctgtgggctcggaaatcacttatgttgacttcagtgttctcaca
actggggaaataagaaagctttcagcaaagcaaatcacaaatccgtcagcctttgatagt
ttgggacatccagttcctggtggtttgtacgatcttgcgttaggtgctttttttcgtaat
aactgtgctacatgcggattgtctgagaggatttgtccgggtcatcaaggtcatattgaa
ttacctgttcccgtctataaccctatgttctttagcaggctttttctcctttctcgtggc
tcatgtatttactgccatcattttaagataagatctatcaagttgcatgcatacgaatgt
aaacttcgtttaattcagtacggcttgattttagaagcttctcagatagataagctgcag
gttgacactgatggagacgacgaagccgttgaatataataaaaaaagtcacgaggctcac
aagctaccagtttctccggccgaatctaacctacttcagaagagagaattgtttgtttat
gaatccatcaatgccgctttaaaggatggtcgtaccagtaagggaggtgtgtacacgggt
gctattcttcaggctcgtaagcaactcatcaaagagatagataaggaacttgttgccaaa
tctcgttgtgagaattgtggaatgcattcacccaaattacgtaacgatggctactctaag
atcttcgctaatgctctttctcctaaggaaagagatgctaacagtaccaacatgtcttta
tctggcaatattcttgagggtgagactagcgacaccgtcgagattgcctctggaaagggt
tctcgttatatcctttccactgagatccttggcttattgaaagctgtttttactgttgag
cagcctcttgtgaaatgtctgtttcactcgaggcccgatactccgaagttggtttctgct
gatatgttctttttacatgtcttggttgtcccgcctacgagattccgtatgcctcaaagg
ctgggtgacgaggtgcacgaaaacacacagaatgagcttctttccaaggttcttaccact
agtcttttgattaaagatttgaatgagcagttccttggattgcagaaagatatcaccgga
gaagaagagaaaaaattgattttcaatagattgatgaatgcttttgttactcttcaaaac
gatgtcaatggatttattgattctagtaaaaatcagaatgccggtccctcgcagaccctc
ttaccgggtatcaagcaggccttggagaagaaagaggggctattccgtaagcatataatg
ggaaaacgtgttaattttgccgcccggtctgttatttcaccagatcctatgatcgagacg
aacgagatcggtttgccccctgtgtttgctacgaaattgacttttccagaacctgttact
tgttataatgttgctgagatgagacagtgcgttatcaatggaccggacaaatggccggga
gccactgaggtgcgcgatgagaatggcaccatcagtttggttggtatgaacgaagagcag
aggcaggccgttgccaagcagttactcacaccctcaggggaaggtaatggtgttgtgaac
aagcaagtgcttagacatattagaaatggcgatgttgttattatgaatcgtcaacctact
cttcataaggcctccatgatgggtcatagagttagggttttgccgaatgaaaagactctt
cgtattcattacgcgaatggtggtccttacaactgtgactatgatggtgatgaaatgaac
ttgcactttccgcaaggtgaattggcacgtgcagaagcctacaatttagctaatacagat
tcacaataccttactcctacttctggttcccctgttcgtggtttgattcaggatcatctt
tccactggtgtatggttgactaataaagagaccttcttcaccagagaaaaatatcaagaa
cttgtgtacggatgtctcagacctgagcataatggacatgggtttggctccggttcttgg
agagtgaagacactaccacctacaatcttcaagcccgttcaattgtggtctggtaagcaa
gtgatatcttctgtcttgcttaacatcagacctgcccaccttcctggagttaatttagag
tccaagaacaaaatcaagaacgagtattggggagaaggatcccacgaaaatgaagtcatt
ttcaagaacggccaattaatttgcggaattcttgataaatctcagtatggttcctctaag
tacggtattattcacgccattcacgaggcatacggcccagatacagctcagagagcgtta
tcctccttaggaagattgctcaccaactacgagcagtggattgcatttacctgtggtatg
gatgacttagagttgaccacttcgggaaatactgatagggatagaatattgtctaaagcc
aaagaggttggtcgtaaagctgctgctgatgttaccaacttagatgaagatattccggtg
accaaccccgagtttcacaaacgacttgaagaggtgttgagagatgatgaaaaacatgcc
attttggatgctgttactatgtccaaagtcaacgctatcactaccgaggtggtggagtct
tgcgtccccgcaggcactgtgaagaagtttccacagaattctatgcaggcgatggcatta
tctggtgctaaaggttctaacgttaatgtgtcgcaaattatgtgtttgttaggacagcag
gctttggagggtcagcgaactccagtcatggtttcaggtaaaacattaccttgtttcaaa
cctttcgacaccgatgctagagctggtggttatatcaagaaccgtttcttttctggaatc
agaccccaggagtactacttccattgtatggcaggtcgtgaaggtttaattgatactgct
gtgaagactgccaactctggttacttgcaacgttgcttgactaaacagttagaaggtgtt
catgttggttacgataacactgtcagaaacgcagacggaagccttatagagttcttgtat
ggtggcgatgctgtggacgtagtcaaggagtcctacttatttaagttcaacttcttttac
gagaattatcaggctttattgcagaagtacagtccatctaatattgacaacttggactcc
gaaactgccgttcattactccaagaagttccgtaaagaactgaagaggcaggcggatgtt
cctgcatggaaacagtcatatgatcatgatcctacagtctccctgttcaacccatcgaga
tatttgggttctgtttctacacgttttgaggaggaattggacaaattcattgagcagaat
aaatctctgttcaagaagcattctgaaactggcgtctcatctaagaaattcaaagctctt
atgcaactcaagtatatgagatctcttatagatcctggtgaagcagttggtattattgca
tctcagtccattggtgagccgtccactcaaatgactttaaataccttccactttgccgga
catggtgctgccaatgtcactttgggtattccacgtcttcgtgagattgtcatgaccgct
tcttcttcgattaaaactccgcaaatgactctgccattgttgactgacgttgatgaacct
gccgctgatgctttctgcaaaacaatctccagacttacgctttccgcgtttattgacgat
gtcacggttactgaaattactgccgatcctaatcaaccagagtcgagacgttcttatgaa
atccgtttgaagttctttgattccaaagactacaaggaagagtatgatctcacgaaggag
gagttggaaatcgttgtttccgacgagttccttgcaatgctcgagagtgaaattgttaag
gagattagaaaacagaagaaagttgttgaggagttacaggatattggacatgctgtggag
tctaaaagtgacgaggtcgacggtgctccattgggttcacttgatgatgattactctgca
cagaaagaaaagagtaaatcgaagcagtctgcatcttatgatggtccagatgatgatgaa
ctagaggctatccgtaaggcagagaaaagcgatagtgatactggcgccgatagcagtatt
gatatcagcagtgatgaagatgatgatatgcaagatgacgatgacgagcctattgatgtt
tcaaagaaaacgcagctcaaaggcaattctcacctagatatgtcaaaggaagcaatcaag
cgtgaacttaaggttattgacagtcatgaatttatctcagagttcaactttgacgacgac
tctggcaaatggtgccagttcaagcttgaactttccggagatacagagaagttgcttatg
gtgaacattgttgaggaaatgtgtaagaagtgtgtggttcggagtgttgctcatattgat
cgatgcttgcacgaggaaggatcaagagatttggtcacagaaggtgttaatttccaagct
atgtgggagcatgactcgttcatcgatgttaatgccattcgttctaatgatatcgccgcc
gttcttcatgtctacggtgtggaagcagcaagaaacactattgttaatgaagtcataaac
gtgtttggccgttatgccattgaggtctcttcaagacatttggacttgattgccgattac
atgaccagagatggtagttatttggcattcaataggcaaggtattgactcttgtacctct
gactttatgaagatgtcttacgaaacgacctgccaatttcttacgaaagccgttctcaat
ggaaatagagaacagcttgagtctccatctgcccgacttgtcatcggtaaattgaacaag
gttggtaccggaagctttgatgtcttggctaagatgcccgtcagagccaactaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (17)   

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