KEGG   Burkholderia oklahomensis C6786: BG90_5352
Entry
BG90_5352         CDS       T03861                                 
Name
(GenBank) tRNA-splicing ligase RtcB family protein
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
boc  Burkholderia oklahomensis C6786
Brite
KEGG Orthology (KO) [BR:boc00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:boc03016]
    BG90_5352
Enzymes [BR:boc01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     BG90_5352
Transfer RNA biogenesis [BR:boc03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    BG90_5352
 Prokaryotic type
   tRNA splicing ligases
    BG90_5352
SSDB
Motif
Pfam: RtcB
Other DBs
NCBI-ProteinID: AJX35746
UniProt: A0A7U4UTH7
Position
II:2023950..2025383
AA seq 477 aa
MDLTRLEQHGEFEWRIPPTGGMRVPGIVYADRKLIGDMDQKVYEQVCNVATLPGIVAASF
AMPDAHWGYGFPIGGVAAFDAHAGGVISAGGVGFDISCGVRTLHTGLAREDIDAVKGKLA
DALFTHIPAGVGSTGRLRLSAAKTDDMLTGGAAWAVKQGYGTPLDLERIEEGGVMRHAKP
SAVSALAKKRQRDEMGTLGSGNHYLEVQEIADIYDPACAQRYGLQRGQVVVTIHCGSRGL
GHQIGTEFLKEMVIAAKSHGIALPDRELACAPILSDLGERYLGAMRAAINCALANRQILT
HLTREVFEKVLPAAQLTLLYDVSHNTCKVEEHVIDGRRRQLYVHRKGATRAFGPGHPALP
DALRDAGQPVLIGGSMGTASYILAGADAAGGERAFGSACHGAGRSMSRFAAARRWRGRAL
VDELASRGILIRSPSDRGVAEEAPGAYKDVGAVVDAAAEAGLARKVARLVPIVCIKG
NT seq 1434 nt   +upstreamnt  +downstreamnt
atggacctgactcggctggagcagcacggcgagttcgaatggcgcattccgccgacgggc
ggcatgcgcgtgcccggcatcgtctatgcggaccgcaagctgatcggcgacatggaccag
aaggtgtacgaacaggtctgcaacgtcgcgacgctgccgggcatcgtcgccgcgtcgttc
gcgatgccggacgcgcactggggatacggcttcccgatcggcggcgtcgcggcgttcgat
gcgcacgcgggcggcgtgatctcggcgggcggggtcggtttcgacatctcgtgcggcgtg
cgcacgttgcatacggggcttgcgcgcgaggacatcgacgcagtgaaaggaaagctcgcc
gacgcgctgttcacgcacatcccggcgggcgtcggcagcaccgggcggctcagactgtcg
gccgcgaaaacggacgacatgctgacgggcggcgccgcgtgggccgtcaagcagggctac
gggacgccgctcgatctcgagcgcatcgaggagggcggcgtgatgcggcacgcgaagccg
tccgcggtgtcggcgctcgcgaagaagcgccagcgcgacgagatgggcacgctcggctcc
ggcaaccactatctcgaagtgcaggagatcgccgacatctacgatccggcgtgcgcgcag
cgctacggactgcagcgcgggcaggtcgtcgtgacgatccactgcggatcgcgcgggctc
ggacaccagatcggcaccgaattcctgaaggagatggtgatcgccgcgaaaagccacggc
atcgcgctgcccgaccgcgagctcgcgtgcgcgccgattctgtcggatctcggcgagcgc
tatctgggcgcgatgcgcgcggcgatcaactgcgcgctcgcgaaccggcagatcctcacg
catctgacccgggaagtcttcgagaaggtgctgccggccgcgcaactgaccctgctttac
gacgtgtcgcacaacacgtgcaaggtcgaagagcacgtgatcgacggtcgccgccggcag
ctctacgtccatcgcaagggcgcgacgcgcgcgttcggacccggccatccggcgctgccc
gacgcgctgcgcgacgccggccagccggtgctgatcggcggtagcatgggaacagcgtcg
tacatcctcgccggcgcggatgcggcgggcggcgaacgcgcgttcggctccgcgtgccac
ggcgcgggccgcagcatgagccgcttcgcggccgcacggcgctggcgcggccgggcgctc
gtcgacgagctcgcgagccgcggcatcctgatccgcagcccgtcggaccgcggcgtcgcc
gaggaggcgccgggcgcgtacaaggatgtcggcgcggtcgtcgacgcggccgctgaggcc
gggctcgcgcgcaaggtcgcgcggctcgtgccgatcgtctgcatcaagggttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (1)   
   Pfam (1)   
All databases (10)   

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