KEGG   Brassica oleracea (wild cabbage): 106293232
Entry
106293232         CDS       T04124                                 
Name
(RefSeq) putative E3 ubiquitin-protein ligase RING1b
  KO
K10695  E3 ubiquitin-protein ligase RNF1/2 [EC:2.3.2.27]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03083 Polycomb repressive complex
    106293232
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:boe04121]
    106293232
   03036 Chromosome and associated proteins [BR:boe03036]
    106293232
Enzymes [BR:boe01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106293232
Ubiquitin system [BR:boe04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    106293232
Chromosome and associated proteins [BR:boe03036]
 Eukaryotic type
  Histone modification proteins
   Polycomb repressive complex (PRC) and associated proteins
    Canonical PRC1 (PRC1.2/1.4)
     106293232
    Noncanonical PRC1 (PRC1.1)
     106293232
    Noncanonical PRC1 (PRC1.3/1.5)
     106293232
    Noncanonical PRC1 (PRC1.6)
     106293232
SSDB
Motif
Pfam: zf-C3HC4_2 zf-C3HC4 zf-RING_2 zf-C3HC4_3 zf-RING_5 zf-RING_UBOX zf-RING_6 zf-RING_4 zf-C3HC4_4 zf-UDP TRAF3_RING
Other DBs
NCBI-GeneID: 106293232
NCBI-ProteinID: XP_013584340
Position
C5:1027694..1031470
AA seq 333 aa
MPALNNFSAAEKEDDQLGRTTQAEEKEEDPDHMDVMEEEEALEEEGSKERSPSSTSEEQS
ESEFIEGIDLEDIRTYVQCPICLGIIRKTRTFMECLHRFCQECIDKSMRFGNHECPACRK
HVASRRSLRPDPKFDAFIAAIFGNIDSYEEQDLAFDGDELARNMQIQATIAQVSQRQSEA
LVKTKSSGKDAPRSQPSGSGSRRRRRNSRNMEHDTSQAAHDDDGDNNRVNASSSAEILPR
KRNRRSAARSTAQPSSSSCPSNNDNNCANDVTEEAHHRDSRGIAHGFAWGKGGRRSNARQ
GNNNQGASSSKSVRNARLNRLVDYLSTLESNSV
NT seq 1002 nt   +upstreamnt  +downstreamnt
atgcctgcgttgaacaacttttccgccgccgagaaagaagacgaccaacttggtcgtacc
acacaagctgaggagaaagaagaagatccggaccacatggatgtgatggaagaagaagaa
gcgttagaagaagaaggttccaaggagagaagtccatcttctacatcagaagagcaatca
gaatcagaatttatagaaggtattgatctagaggatatccgtacgtacgtgcagtgtccg
atatgtctaggaattataaggaaaacaaggactttcatggaatgtctccatcggttttgt
caagagtgcattgataagtcaatgagatttgggaaccatgagtgtcctgcttgtagaaaa
catgtagccagccgacgttcattaagacccgacccaaaattcgatgcttttattgcagct
atattcggaaatatcgatagttatgaggagcaggatttggcttttgatggagatgagttg
gctcgtaatatgcagattcaagcaactatagctcaagtatcgcaacgacaatctgaggcc
cttgtgaaaacaaagtcttctggtaaagatgcaccgagatcacagcctagtggtagtggc
tccagaagaagaaggaggaacagcagaaacatggaacatgatacatcacaagccgcccat
gatgatgatggtgataacaacagagtcaacgcttcgtcttctgctgaaatactgccgaga
aaaagaaacaggcgctctgcagctcgttctacagctcagccttcttcttcttcatgtcca
agcaacaatgataataactgcgctaatgatgtcacagaggaagcgcatcatagagacagc
agaggcatagcacatgggtttgcatggggaaaaggcggcagaaggagtaacgcaagacaa
gggaacaataaccaaggagctagtagtagtaagagtgttaggaatgctcgcttgaacaga
cttgtggattatctcagtaccttagagagtaacagtgtctaa

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (11)   
   Pfam (11)   
All databases (24)   

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