KEGG   Brassica oleracea (wild cabbage): 106308212
Entry
106308212         CDS       T04124                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 5A
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03020  RNA polymerase
boe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    106308212
  09124 Replication and repair
   03420 Nucleotide excision repair
    106308212
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:boe03021]
    106308212
   03400 DNA repair and recombination proteins [BR:boe03400]
    106308212
Transcription machinery [BR:boe03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     106308212
  RNA polymerase III system
   RNA polymerase III
     106308212
  RNA polymerase I system
   RNA polymerase I
     106308212
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      106308212
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N DUF2405 DUF3221
Other DBs
NCBI-GeneID: 106308212
NCBI-ProteinID: XP_013600798
UniProt: A0A0D3DTU3
Structure
Position
C8:30964104..30966039
AA seq 230 aa
MEGIGNDKSSCSSSSTVPSPCLSKYVDPSSEESHRYYLARRNALEMLRDRGYEVSLEDIN
LSLQDFRTVYGERPDVDRLRISAHHRSDSSNKVKVVFFGTSKVKVNTIRSVAAEILSQET
ITGLILVLQNQVTDKALKAIELFTFKVEIFQITDLLVNLTKHVLSLRHRVLTDGEKKALL
KHFNIEEKQLPRISKKDAVVRYYGLEKGQVVKVSYRGELTESYVAYRCVW
NT seq 693 nt   +upstreamnt  +downstreamnt
atggaggggatagggaacgacaagagttcgtgttcgagttcgagtacagttccgagtcct
tgtctgagcaagtacgtggatccatcgagcgaagagtctcacagatactatctcgcgagg
cggaacgccttggagatgctcagagacagaggctatgaagtatccctcgaagatatcaat
ctctccctccaggattttcgaactgtttacggcgaacgtcccgacgttgaccgcctccgt
atctccgctcatcatcgctccgattcttccaataaggtaaaggttgtcttttttggtact
agtaaggttaaagtcaacacaatccggagtgttgcagcagagatacttagccaagagacc
ataaccgggctgatactggttctccaaaaccaagtaaccgataaagccttgaaagccatt
gagcttttcactttcaaggtcgagatattccagataaccgacttgctagtcaacctaacc
aaacacgtactgagcctgcgtcatcgtgttctgactgatggagagaagaaagcacttctc
aagcacttcaacatcgaggaaaaacagcttcctcggatctcaaagaaagacgcggttgtg
cggtactatggattagagaaaggacaagttgtgaaagtgagttacagaggcgaactcact
gagtcctatgttgcctaccgatgtgtgtggtga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
3D Structure (1)   
   PDB (1)   
Protein domain (4)   
   Pfam (4)   
All databases (18)   

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