KEGG   Brassica oleracea (wild cabbage): 106334095
Entry
106334095         CDS       T04124                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 1
  KO
K03006  DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03020  RNA polymerase
boe03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    106334095
  09124 Replication and repair
   03420 Nucleotide excision repair
    106334095
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:boe03021]
    106334095
   03400 DNA repair and recombination proteins [BR:boe03400]
    106334095
Enzymes [BR:boe01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     106334095
Transcription machinery [BR:boe03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     106334095
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      106334095
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_6 RNA_pol_Rpb1_7 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_Rpb1_R
Other DBs
NCBI-GeneID: 106334095
NCBI-ProteinID: XP_013627895
UniProt: A0A0D3BK74
Position
C3:complement(55751903..55759386)
AA seq 1838 aa
MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI
DRKVKCETCMANMAECPGHFGHLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEDEHK
FKQAMKIKNPKNRLKKILDACKNKTKCEGGDDIDDVQTQDTDEPVKKSRGGCGATQPKIT
IEGMKMIAEFKVTKKKNDEIDQLPEPAERKQTLGADRVLSVLKRISDEDCQLLGFNPKYA
RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII
SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII
RDDGQRLDLRYLEKSSDHHLELGYKVERHLIDGDFVLFNRQPSLHKMSIMGHRIRIMPYS
TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD
TLLGCRKITKRDTFIEKDVFMNTLMWWQDFDGKVPAPTILKPRPLWTGKQVFNLIIPKQI
NLFRYSAWHSDAETGYITPGDTQVRIERGELLAGTLCKKTLGTGNGSLVHVIWEEVGPDA
ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSQTMEKINETISCAKTAVKDLIRQFQEKK
LDPEPGRTMTETFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM
TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
EGLIDTAVKTSEPGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
KLDSLKMKKAEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYQKLEADRF
QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV
PGEDGLSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEVESRFLQSLVAP
GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED
VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRI
MNDEGAKGEAQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSKFDEDEGFK
TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD
GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD
CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPMSGT
PYHESMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSP
TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS
YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT
SPSYSPTSPSYSPTSPAYSPTSPGYSPTSPSYSPTSPSYGPTSPSYNPQSAKYSPSLAYS
PSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPSSPTYSPSSPYSSGASPDYSPSAGY
SPTLPGYSPSSTGQYTPHEGDKNDKTGKDASKDDKSNP
NT seq 5517 nt   +upstreamnt  +downstreamnt
atggatacgcggtttccgttctctccggccgaggtctccaaagtccgtgtggtccagttt
gggattctcagccccgatgagatcaggcaaatgtctgttatacacgtggagcatagtgag
accacggagaagggtaaacctaaggtgggagggttgagtgatactcggcttggaacgatt
gataggaaggtcaagtgtgagacgtgtatggctaacatggccgagtgtcctgggcatttt
gggcatcttgagctcgctaagcctatgtatcatgtgggtttcatgaagaccgtgttgagt
atcatgcgttgtgtttgcttcaactgctccaagatcctagctgatgaggatgagcataag
tttaagcaggccatgaagattaagaatcccaagaataggcttaagaagattctggatgct
tgcaaaaacaagaccaagtgtgaaggtggtgatgacattgatgatgttcaaacccaagac
acagacgagcctgtgaagaaaagccgtggtggatgtggtgcaacgcaacctaagatcact
attgagggaatgaagatgattgcagagtttaaggttacaaagaagaaaaacgatgaaata
gaccagcttccagagcctgcagaaaggaaacaaacacttggcgctgacagggttttgagt
gttttaaagaggattagtgatgaggattgtcagctcttagggtttaaccctaagtatgct
cggcctgactggatgattctagaagtccttcctattcctccaccccctgttagaccatct
gttatgatggatgccacttccaggagtgaggatgacttgactcatcagctagctatgatt
attcggcacaacgagaacttgaaaagacaggaaaagaacggagccccagctcacattatt
tcagagtttacacaactcctgcagttccatatagcaacctattttgataatgagctgcct
ggacagccaagagctactcaaaaatcagggaggcctattaaatcaatttgtagtaggctg
aaggcaaaggaaggcaggatcaggggaaatttgatgggaaaacgtgtggatttctcggca
cgtactgttattacaccagatccaacaataaatatcgatgaacttggtgtaccgtggagt
attgccctgaatctcacatacccagaaacagttactccatacaacattgagagattgaag
gagcttgttgattatggaccacatcctccacctgggaagactggggcgaaatatatcatt
cgggatgatggccagagactagatcttcggtacctggagaagagcagtgatcatcatttg
gaacttggatacaaagtggagaggcacttaattgatggcgattttgttcttttcaatcgt
caaccaagtctgcacaaaatgtctatcatgggtcacaggattaggatcatgccatattcg
accttccgtctgaatttgtctgtcacctctccttacaatgctgatttcgatggggatgag
atgaacatgcacgtaccacagtcattcgagaccagagcagaggtgttggagctgatgatg
gttcctaaatgtattgtctctcctcaggcaaatcggcctgtgatgggtattgtgcaggat
acccttctaggatgccgtaaaatcacaaaaagagatacctttattgagaaggatgtattc
atgaatacgcttatgtggtggcaagacttcgatgggaaagttccagctcctacaattctg
aagccacgacctctttggactggcaaacaagtcttcaatcttatcataccaaagcagata
aatctgttcaggtactctgcttggcactcagatgcagagactggatacataactccaggg
gatacccaagtgagaattgaaagaggagaacttcttgccggaactctctgcaaaaagacc
cttggtaccggtaatgggagtctcgttcatgttatttgggaagaggttggtcctgatgca
gctaggaagttcctcggtcatactcaatggctggtcaactactggcttctgcaaaatggt
tttaccattggaatcggtgatactattgctgattcgcaaacaatggagaaaattaatgag
actatttcttgtgcaaaaaccgccgtgaaagaccttatccgtcagttccaggaaaagaaa
ttggatcctgaaccggggcgaactatgaccgagacgtttgagaacagagttaaccaggtt
ttgaataaagctcgtgacgatgctggaagtagtgctcaaaagagtttagcagaaaccaat
aacctgaaggccatggtgacagcaggatccaaaggaagtttcatcaatatttctcaaatg
acagcgtgtgttggtcagcaaaatgtggaagggaagcggatcccatttggatttgatggc
cggacgttaccgcatttcaccaaagatgactatgggcctgaaagtcgtgggtttgtcgag
aattcgtatctgcgtgggctgactcctcaagagttttttttccatgccatgggaggaagg
gaaggtcttattgatactgccgtgaagacatcagaacctggatacattcagaggcgattg
gtcaaggctatggaggatattatggttaagtatgatgggaccgtcagaaactcgttgggt
gatgtcattcagtttctctatggggaagatggtatggatgctgtgtggatagaatctcag
aagctggattccttgaaaatgaagaaagcagagtttgataggacgttcaagtacgagatt
gacgacgagaactggaatcctacatacctaagtgatgaacatcttgaggacttgaaaggg
atcagggagttgcgtgatgtatttgatgcagaatatcagaaactcgaggctgatagattt
caactcgggacagaaattgctacaaatggtgatagcacttggccattacctgtgaacatc
aagaggcatatctggaatgcacagaagactttcaagattgacttgcgcaagatttcggat
atgcaccctgttgagattgttgatgcagttgataaattacaggagaggctgttggttgtt
cctggtgaagatggattgagtgtagaagcacagaaaaatgccacactgttcttcaacatt
ttgcttcgaagcactcttgctagtaaaagggttttggaggaatacaagctcagccgtgag
gcttttgagtgggttattggtgaggtagagtcaaggttcttacagtcgcttgtagctccc
ggggaaatgatcggttgtgttgctgctcagtcaattggagagcctgctacgcagatgact
ttgaatactttccattatgctggtgtcagtgcgaagaatgttacactcggtgttcccagg
ctgcgagagattattaacgtcgctaaaaggattaaaacaccttccctatctgtctacctt
acaccagaagctagcaaatcaaaagagggggctaaaactgttcagtgcgctttggagtat
actactctcaggagtgtcactcaagccacggaggtttggtatgacccggatccgatgagt
accattatcgaagaagattttgaatttgtgaggtcctactatgaaatgccagatgaagat
gtctctccagataaaatatctccttggctgcttcgtattgagttaaatcgtgaaatgatg
gttgacaagaagttgagtatggcagatatagcagagaagatcaacctggagtttgatgat
gacctgacctgcatatttaatgatgacaatgcggagaaactgatccttcggatccggatt
atgaatgacgagggagccaaaggagaagcgcaagatgaatcagctgaagatgatgttttc
cttaaaaagattgagagcaacatgctgacagaaatggcactcaggggtattccagacatc
aacaaggtgttcattaagcaggttagaaaaagcaagtttgatgaggatgaaggattcaag
acatcggaggagtggatgttagatacagaaggcgttaatctgctggctgttatgtgccac
gaagatgtggatccaaagaggacaacaagcaatcacttgattgagattattgaagttctt
ggaattgaagcagttcgtcgtgctttgttggatgagcttcgagttgtgatatcctttgat
ggctcttatgtgaattaccgccatcttgccatattgtgtgatacaatgacctatcgaggt
catctgatggcgatcactcgacatggtatcaacagaaatgatactgggcctctgatgagg
tgctcatttgaagaaactgtcgatattctgctggatgctgcagcttatgctgagacagac
tgcttgcgtggtgttacggaaaatattatgctcggccagcttgcacctattggaacagga
gactgcgaactctatctgaatgatgagatgctgaagaatgcaattgaacttcagctccct
agctatatggatggactggagtttggaatgactcctgctcgctcgccaatgtcaggaact
ccttatcatgaaagcatgatgtccccaaactacctcctgagtccaaatatgcggttgtct
ccaatgtcagatgctcagttttctccatatgttggtggaatggcgttttctccttcttca
tctccaggctacagcccatcttctcctggttacagtcctacttctcctggttacagtccg
acttcacctggatacagtccgacttctcctggctatagtcccacttctcccacgtacagt
cctagttctcctggctatagcccaactagccctgcttattctccaacaagtccttcatat
tctcccacctcccctagctacagcccaacgtctcctagctacagcccaacgtctccaagc
tacagtccaacgtctccaagctacagcccaacatccccgagttacagtccaacttcacct
gcttacagtccaacttctcctgcatacagcccaacgtcacctgcatacagccctacctct
ccatcttacagtccaacttcaccatcttacagtccgacatcgccttcttacagccctact
tcaccctcctacagtccaacatctccttcttacagccctacttcacctgcatacagccct
acgtctcctggctacagccctacatctccaagctacagtccaacgtctcctagttacggt
ccgacatctccaagctacaaccctcagtctgctaaatacagtccatctctggcttactct
cctagcaatgcaagactatcaccagctagcccttacagtcctacatctccaaactacagc
cctacatcaccatcctactcacccacatctccatcgtattcaccttcaagtccaacatac
agtcccagcagcccatacagctcaggagcaagccctgactacagcccaagcgcaggttac
tcaccaacacttcctggttattcaccctcatccaccggtcagtatacaccacatgagggt
gataaaaatgacaagactggaaaagatgccagcaaggatgataaaagcaacccttga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (8)   
   Pfam (8)   
All databases (27)   

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