KEGG   Brassica oleracea (wild cabbage): 106336651
Entry
106336651         CDS       T04124                                 
Name
(RefSeq) pre-mRNA-processing factor 19 homolog 2-like
  KO
K10599  pre-mRNA-processing factor 19 [EC:2.3.2.27]
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03040  Spliceosome
boe04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106336651
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    106336651
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:boe03041]
    106336651
   04121 Ubiquitin system [BR:boe04121]
    106336651
   03400 DNA repair and recombination proteins [BR:boe03400]
    106336651
Enzymes [BR:boe01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     106336651
Spliceosome [BR:boe03041]
 Complex B
  Other components
   Prp19 complex
    106336651
 Complex C
   Prp19-CDC5 complex
    106336651
Ubiquitin system [BR:boe04121]
 Ubiquitin ligases (E3)
  U-box type E3
   106336651
DNA repair and recombination proteins [BR:boe03400]
 Eukaryotic type
  Other factors with a suspected DNA repair function
   PSO4 complex
    106336651
SSDB
Motif
Pfam: WD40 Prp19 ANAPC4_WD40 eIF2A NBCH_WD40 PROPPIN WD40_like zf-Nse U-box PAS_11 Nup160 DUF1635 Coatomer_WDAD
Other DBs
NCBI-GeneID: 106336651
NCBI-ProteinID: XP_013630998
Position
C4:9777453..9782125
AA seq 525 aa
MNCAISGEVPEVPVVSTKSGLLFEKRLIESHISDYGKCPVTGEPLTIDDIVPIKSGKVIK
PKLLHTASIPGLLGTFQNEWDGLMLSNFALEQQLHTARQELSHALYQHDSACRVIARLKK
ERDEARQLLAEVERHIPAAPEAVTANAPLSNGKRAADDEETGPDAKKLCPGISADIITEL
TDCNAALSQKRKKRQIPETLASVDALGRFTQLSSHPLHKTNKPGICSMDILHSKDVIATG
GIDATAVIFDRPSGQILSTLTGHSKKVTSVKFVGDSDLVLTASADKTVRVWRDSGDGQYA
CGHTLNDHSEEVRAVTVHATNKYFVSASLDSTWCFYDLSSGLCLAKVADDSEKVDYTAAA
FHPDGLILGTGTSQSVVKIWDVKSQANVARFDGHTGEVTSISFSENGYFLATAAEDGVKL
WDLRKLRNFRSFSSADANSVEFDPSGSYLGIAASDIRLYQTASVKAEWNLIKTLPDLSGT
GKATCVKFGPDAQYVAVGSMDRNLRIFGLPGDEKANADDDSAQDS
NT seq 1578 nt   +upstreamnt  +downstreamnt
atgaactgtgcaatttctggagaagttcccgaggtgcctgtggtttcaacgaagtcaggt
ttgctcttcgagaagcgattaatcgagagccatatatcggattatgggaagtgcccggtt
actggggagcctcttaccattgatgacattgttcccatcaaatctgggaaggtcataaaa
ccgaaactattgcatactgctagtatccctggattgcttggaacgttccagaatgaatgg
gacggtttgatgctatcaaattttgctctggagcaacaactccatactgcaaggcaagag
ctaagtcatgctttgtatcagcatgattctgcttgtcgcgtgattgctagacttaaaaaa
gaaagagatgaagcacgccaattacttgcagaggttgaacgacatatacctgctgcccca
gaagctgtgacagctaatgctcctctgagtaatggtaaacgagctgccgatgatgaagaa
acgggtcctgatgcgaagaagttgtgccctggcatttctgctgacatcatcacggaattg
acagattgcaatgctgctctctcccagaagcgcaaaaagcgacagattcctgaaacattg
gcttcagtagatgctttggggaggttcactcagctatcaagccacccacttcacaagacc
aacaaacctggcatttgttcaatggacatcttacattctaaggatgtcattgctactgga
ggaattgatgcaactgctgtaatatttgatcgcccttcagggcaaatcttgtcgacactg
actggtcactcgaaaaaggttacaagtgtaaaatttgtaggtgacagtgatcttgttttg
actgcttcggctgacaagacagtccgtgtgtggcgggactctggggatgggcagtatgct
tgtgggcatacgctgaatgatcattctgaagaggtgcgtgctgtaactgtgcatgccaca
aataaatactttgtgtcggcgtctcttgacagtacatggtgcttctacgatctttcttct
ggcttatgccttgcaaaggtagcagatgattctgagaaagtggattacacggctgctgct
tttcatcccgatggtctcattctcggaaccggtacttctcaatctgttgtcaagatttgg
gatgttaaaagtcaggcaaatgtggcaaggtttgatggacacacgggtgaagttacctct
atatctttctccgagaatggttacttcctcgcgactgctgccgaggatggtgttaaattg
tgggacctgcgcaagttaaggaacttcaggtcattctcatctgcagatgcaaactctgtg
gagtttgatcctagcggttcttatcttggtattgctgcatcagatatcagactataccag
acggcgagtgtgaaagctgaatggaaccttatcaagacacttccagacctttctggcact
ggtaaagctacatgtgtgaagtttggtccagatgcacaatacgttgcagttggctcaatg
gaccgtaacctacggatatttggtctccctggtgacgaaaaagccaacgcggatgatgac
tctgcacaagactcgtga

  All links  
Ontology (5)   
   KEGG BRITE (5)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (13)   
   Pfam (13)   
All databases (28)   

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