KEGG   Brassica oleracea (wild cabbage): 106342350
Entry
106342350         CDS       T04124                                 
Name
(RefSeq) THO complex subunit 4D
  KO
K12881  THO complex subunit 4
Organism
boe  Brassica oleracea (wild cabbage)
Pathway
boe03013  Nucleocytoplasmic transport
boe03015  mRNA surveillance pathway
boe03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:boe00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    106342350
  09122 Translation
   03013 Nucleocytoplasmic transport
    106342350
   03015 mRNA surveillance pathway
    106342350
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:boe03019]
    106342350
   03041 Spliceosome [BR:boe03041]
    106342350
Messenger RNA biogenesis [BR:boe03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     106342350
    TREX complex
     106342350
Spliceosome [BR:boe03041]
 Complex C
  Other components
   EJC/TREX
    106342350
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    106342350
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-GeneID: 106342350
NCBI-ProteinID: XP_013636713
UniProt: A0A0D3BZH8
Position
C4:complement(35713509..35716225)
AA seq 302 aa
MSGALDMTLDESIKRAKAARSGGGGGGGGRGSSRRGRGGGRGHGHGPNGFLGGGRGNGPA
RRGPLAVNARSSSFTINKPVRRTRSVPWQNGLFEDGLRAAGVSGVDVETRLHITNLDNGV
TNDDIRELFSEIGELKRYAIHFDKNGRPSGTAEVVYPRRSDAIQALKKYNNVLLDGRPMR
LEILGGNNYEAPPLSGRVNVNVSGLNGRLKRTVVIQQGGGRGIGRLRGRGRGRGGRGPAP
TVNRLPIQNRQGGGRGGFRGGRGRGGRGRGGGRGNGKKPVEKSAADLDKDLESYHADAMN
TS
NT seq 909 nt   +upstreamnt  +downstreamnt
atgtctggagctttagatatgactcttgatgaatctatcaagagggccaaggctgctagg
tctggaggaggaggaggaggaggaggaagaggaagttcccgccgtggccgtggtggtggt
cgtggtcatggtcatggacctaatgggtttcttggtggtggaagaggaaacggacctgct
cgtagaggccctcttgctgtcaatgctcggtcctcatctttcaccattaacaagcctgtt
cgtaggaccagaagcgtgccatggcagaatggcttgtttgaagatggcctaagagctgct
ggagtgtcaggggttgatgttgaaaccaggctccatattaccaacctagacaacggtgtg
acaaacgatgatataagggaactcttctctgagattggggagctaaaacgttatgcgatt
cattttgacaaaaatgggcggccaagtggcacagctgaagtggtgtatccacgaagaagt
gatgcaattcaagctctgaagaaatacaacaatgtgttgttggatggaaggccaatgaga
cttgagattttgggtggaaacaactatgaggctcctcctttatctggtcgtgtgaatgtg
aatgtctctggactcaatggaaggctgaagaggaccgtcgttatccagcaaggaggaggg
agaggtattggtagattgagagggagagggagagggagaggaggaagaggtccagctcct
actgtcaatcgccttccaattcaaaaccggcaaggagggggaaggggtgggtttcgtggt
ggtagagggcgtggtggacgtggtcgtggtggtggaagagggaatgggaagaagccagtg
gagaaatcggctgctgaccttgacaaggatcttgagagctatcacgcagatgccatgaac
acttcttaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (17)   

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